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MH825700.1__AYD86263.1__SEA_EFEKO_17__00017
Bact-VirMH825700.1__AYD86263.1__SEA_EFEKO_17__00017
Identity
- Accession:
- MH825700 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Orlajensenviridae›
Efekovirus›
Microbacterium_phage_Efeko
TaxID: 2315704
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-56
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.59 | 47.0 | 2.97e-01 | 92.5% | 27.5% |
| 1vwxB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 38.0 | 2.72e-01 | 77.4% | 77.8% |
| 2hb0B02 | 2.60.40.2040 | Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, pilin domain | 0.54 | 44.0 | 3.17e-01 | 96.2% | 84.3% |
| 1bvp102 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 36.0 | 2.81e-01 | 71.7% | 63.9% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.53 | 27.0 | 2.94e-01 | 100.0% | 45.7% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 38.0 | 3.45e-01 | 83.0% | 57.7% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 35.0 | 3.25e-01 | 73.6% | 61.3% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.51 | 38.0 | 3.96e-01 | 88.7% | 100.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3488536 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 52.0 | 5.34e-01 | 73.6% | 86.0% |
| 3478176 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 59.0 | 5.29e-01 | 88.7% | 89.3% |
| 3519690 | 11.1.5.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF31151 | 0.65 | 47.0 | 3.51e-01 | 79.2% | 47.6% |
| 4027579 | 375.1.8.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F › COX5B | 0.62 | 42.0 | 3.76e-01 | 73.6% | 48.8% |
| 3377609 | 4.1.1.75 ↗ | beta barrels › SH3 › SH3 › SH3 › NdhS | 0.61 | 42.0 | 4.52e-01 | 75.5% | 84.4% |
| 3605345 | 375.1.8.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F | 0.60 | 41.0 | 3.89e-01 | 71.7% | 60.0% |
| 3594220 | 375.1.8.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F › zf-CHCC | 0.60 | 41.0 | 3.43e-01 | 71.7% | 41.1% |
| 2644097 | 375.1.8.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F › zf-CHCC | 0.59 | 40.0 | 3.14e-01 | 71.7% | 35.6% |
| 3568883 | 243.3.1.27 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Dynactin_p62 | 0.55 | 38.0 | 3.04e-01 | 71.7% | 71.2% |
| 3586706 | 3792.1.1.2 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd | 0.53 | 44.0 | 3.75e-01 | 96.2% | 71.1% |
| 3360403 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.52 | 38.0 | 3.92e-01 | 79.2% | 88.0% |
| 3390587 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 38.0 | 3.74e-01 | 81.1% | 91.7% |
| 3215027 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.51 | 35.0 | 3.51e-01 | 71.7% | 100.0% |
| 3810292 | 3792.1.1.2 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd | 0.51 | 38.0 | 3.57e-01 | 88.7% | 86.7% |
| 3297966 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.51 | 42.0 | 3.28e-01 | 92.5% | 64.2% |
| 3262233 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.41e-01 | 88.7% | 82.2% |