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MH825712.1__AYD87386.1__SEA_VALENTINIPUFF_91__00091

Bact-Vir

MH825712.1__AYD87386.1__SEA_VALENTINIPUFF_91__00091

Identity

Accession:
MH825712 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Valentinivirus› Microbacterium_phage_ValentiniPuff

TaxID: 2315705

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-74
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 50.0 4.81e-01 71.2% 59.2%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 50.0 4.80e-01 74.2% 65.3%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 49.0 4.93e-01 74.2% 73.8%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.69 52.0 4.18e-01 80.3% 41.3%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 42.0 4.35e-01 71.2% 67.2%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.66 47.0 4.68e-01 78.8% 75.0%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 42.0 4.17e-01 71.2% 62.9%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 43.0 4.24e-01 72.7% 65.2%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 3.54e-01 72.7% 41.1%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.95e-01 78.8% 100.0%
5wxuD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 42.0 2.88e-01 78.8% 53.0%
1qb2A00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.56 45.0 3.96e-01 93.9% 92.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289138 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.77 55.0 5.95e-01 75.8% 90.9%
4008959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 56.0 6.04e-01 83.3% 92.7%
4054648 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 54.0 5.81e-01 78.8% 94.5%
3603739 101.1.1.498 ↗ alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 0.71 63.0 4.02e-01 100.0% 73.5%
5063318 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.70 48.0 5.10e-01 71.2% 85.5%
4008322 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.65 47.0 5.15e-01 80.3% 90.9%
5051680 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.63 48.0 4.59e-01 86.4% 70.0%
4952807 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.61 45.0 4.39e-01 83.3% 82.7%
4970998 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.60 42.0 3.71e-01 74.2% 50.0%
5072014 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.58 43.0 4.18e-01 80.3% 73.3%
3587762 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.56 40.0 3.76e-01 80.3% 59.1%
3933366 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.54 39.0 3.91e-01 78.8% 78.6%
4550123 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.52 36.0 3.80e-01 72.7% 86.7%