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MH834595.1__AYN56844.1__PBI_ANDREW_29__00029

Bact-Vir

MH834595.1__AYN56844.1__PBI_ANDREW_29__00029

Identity

Accession:
MH834595 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andrewvirus› Arthrobacter_phage_Andrew

TaxID: 2419946

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.63 41.0 3.37e-01 100.0% 36.6%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.61 47.0 4.18e-01 83.6% 58.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 33.0 2.81e-01 85.2% 29.5%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 37.0 2.50e-01 98.4% 15.4%
3bqjA01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.59 48.0 3.47e-01 93.4% 79.5%
6jx5A01 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.59 43.0 4.10e-01 80.3% 92.0%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 43.0 3.34e-01 78.7% 63.8%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.58 44.0 3.89e-01 82.0% 72.4%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.86e-01 85.2% 60.2%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 2.83e-01 73.8% 45.8%
4r9iA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.55 42.0 2.89e-01 90.2% 95.7%
6mvtA03 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 46.0 3.13e-01 100.0% 58.7%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 42.0 3.43e-01 100.0% 43.7%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 43.0 3.59e-01 95.1% 65.5%
3w7tA03 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 44.0 2.64e-01 93.4% 27.8%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.38e-01 90.2% 57.6%
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.53 40.0 3.62e-01 82.0% 74.4%
6h9xA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 44.0 2.86e-01 100.0% 75.8%
3aqfB00 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.51 38.0 3.37e-01 96.7% 52.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.50 42.0 3.87e-01 98.4% 91.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385823 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.71 43.0 3.52e-01 98.4% 32.2%
3258821 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.70 39.0 2.33e-01 90.2% 7.6%
3168225 109.4.1.3136 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, PPP5, TPR_19 0.66 38.0 2.72e-01 77.0% 18.9%
4515517 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.63 45.0 4.02e-01 77.0% 56.7%
4310838 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.61 43.0 3.93e-01 75.4% 55.3%
4468826 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.59 48.0 4.18e-01 90.2% 60.0%
4998579 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 2.97e-01 100.0% 23.6%
3839655 235.1.1.5 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly 0.58 43.0 2.93e-01 82.0% 58.8%
3786625 109.4.1.165 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dsl1_C 0.56 40.0 2.36e-01 78.7% 22.7%
4945661 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.54 38.0 2.61e-01 75.4% 75.7%
5074542 3326.1.1.1 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.54 37.0 2.96e-01 70.5% 62.5%
3310263 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.53 43.0 2.75e-01 91.8% 88.9%
3386682 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.53 34.0 2.07e-01 73.8% 10.1%
5083758 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.51 37.0 3.46e-01 77.0% 84.0%
4023956 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.50 42.0 3.40e-01 100.0% 46.2%
4000395 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.50 41.0 2.98e-01 100.0% 77.1%