Back to structures

MH834598.1__AYN55865.1__PBI_AUXILIUM_91__00091

Bact-Vir

MH834598.1__AYN55865.1__PBI_AUXILIUM_91__00091

Identity

Accession:
MH834598 ↗
Kingdom:
phage

Quality

59.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 58-109
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1totA00 3.30.60.90 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type 0.70 58.0 5.90e-01 98.1% 96.2%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 47.0 4.04e-01 75.0% 55.3%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 45.0 3.36e-01 71.2% 31.3%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 46.0 3.02e-01 73.1% 22.2%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 45.0 3.21e-01 73.1% 28.1%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 46.0 3.51e-01 75.0% 31.5%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.64 56.0 4.11e-01 98.1% 36.2%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 53.0 4.44e-01 96.2% 83.0%
4durB01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.64 51.0 4.46e-01 98.1% 58.0%
6ixwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 47.0 3.34e-01 80.8% 69.8%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 43.0 4.24e-01 76.9% 67.3%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 3.16e-01 75.0% 94.2%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 3.44e-01 73.1% 48.0%
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.60 50.0 3.42e-01 94.2% 98.9%
2e5rA00 3.30.60.90 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type 0.60 47.0 4.49e-01 90.4% 81.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 42.0 3.10e-01 75.0% 94.2%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 37.0 3.34e-01 71.2% 45.8%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.58 40.0 3.10e-01 73.1% 50.0%
2lcqA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 40.0 4.34e-01 78.8% 100.0%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.58 44.0 2.77e-01 84.6% 45.4%
3ooxA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.58 46.0 2.89e-01 90.4% 82.3%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 43.0 3.00e-01 88.5% 59.3%
2fazA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 37.0 3.33e-01 73.1% 44.2%
5i8gA03 2.10.110.40 Mainly Beta › Ribbon › Cysteine Rich Protein › CREB-binding protein/p300 RING domain 0.57 46.0 4.44e-01 96.2% 96.7%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.56 38.0 3.17e-01 73.1% 66.3%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.56 39.0 2.96e-01 73.1% 46.2%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 39.0 3.31e-01 75.0% 64.1%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 44.0 4.18e-01 92.3% 92.4%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.56 38.0 3.73e-01 71.2% 66.1%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 42.0 4.15e-01 88.5% 93.2%
3kd4A01 2.60.40.3140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 2.78e-01 75.0% 29.3%
7fh5A01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.55 45.0 2.98e-01 98.1% 43.2%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.17e-01 75.0% 50.0%
2bopA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 45.0 3.90e-01 100.0% 97.6%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 45.0 3.97e-01 100.0% 100.0%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 44.0 4.22e-01 98.1% 93.7%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.69e-01 100.0% 20.7%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 2.87e-01 90.4% 76.2%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.08e-01 98.1% 59.2%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 39.0 2.87e-01 100.0% 70.4%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219661 376.1.3.82 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ZZ 0.80 57.0 6.29e-01 86.5% 100.0%
4964347 904.1.1.55 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PF26046 0.77 61.0 6.42e-01 90.4% 100.0%
3787741 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 62.0 5.98e-01 94.2% 80.0%
3215621 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.74 61.0 6.08e-01 98.1% 87.3%
3850433 376.1.1.96 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ_ADA2 0.73 57.0 5.83e-01 84.6% 100.0%
3208641 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.73 61.0 5.58e-01 94.2% 70.0%
3299662 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.73 62.0 4.76e-01 96.2% 88.3%
3480497 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 64.0 6.09e-01 98.1% 85.0%
3650976 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 64.0 5.41e-01 98.1% 65.1%
3743562 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.72 59.0 6.00e-01 90.4% 100.0%
3895014 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.72 63.0 5.21e-01 98.1% 56.7%
4811774 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.72 59.0 6.03e-01 90.4% 100.0%
4001126 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.72 61.0 6.25e-01 100.0% 100.0%
4011099 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.72 62.0 5.85e-01 100.0% 83.1%
3501562 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.71 61.0 6.20e-01 98.1% 100.0%
3844612 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.71 62.0 5.94e-01 98.1% 85.0%
3594163 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 61.0 6.21e-01 98.1% 100.0%
3391126 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.71 62.0 5.54e-01 100.0% 74.7%
4027754 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.70 60.0 6.08e-01 96.2% 100.0%
3966460 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.70 50.0 3.21e-01 75.0% 15.4%
4190899 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.70 53.0 3.73e-01 92.3% 25.9%
3530625 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.69 60.0 5.32e-01 98.1% 72.0%
5026569 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 47.0 3.65e-01 73.1% 33.0%
3642996 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.68 58.0 4.71e-01 98.1% 61.0%
3652056 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.68 58.0 4.00e-01 98.1% 36.2%
3181845 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.67 54.0 5.48e-01 88.5% 98.0%
None 0.67 59.0 4.22e-01 100.0% 38.7%
3406121 6171.1.1.0 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.67 59.0 3.91e-01 100.0% 28.6%
3361555 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.67 58.0 4.39e-01 98.1% 53.6%
3635626 377.1.1.104 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZZ_ADA2 0.67 57.0 4.05e-01 100.0% 36.5%
3298794 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.67 57.0 4.06e-01 100.0% 74.7%
3342558 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 57.0 4.14e-01 100.0% 76.1%
3611596 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 56.0 4.87e-01 96.2% 67.5%
2499556 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.66 57.0 4.87e-01 100.0% 69.0%
1413915 377.1.1.27 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › KDM6_GATAL 0.66 57.0 5.11e-01 98.1% 76.0%
3430914 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 57.0 5.35e-01 100.0% 83.1%
3178301 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 54.0 4.43e-01 96.2% 58.0%
4000496 6171.1.1.0 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.65 56.0 3.80e-01 100.0% 55.5%
4946461 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.65 55.0 3.63e-01 98.1% 44.4%
3277277 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.64 48.0 2.93e-01 82.7% 31.7%
3458107 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.63 50.0 4.99e-01 96.2% 90.9%
8246 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 43.0 4.24e-01 76.9% 67.3%
3682108 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.63 44.0 4.48e-01 75.0% 86.0%
4028554 10.30.1.0 beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain 0.62 43.0 3.71e-01 73.1% 69.0%
3624453 11.1.1.813 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C 0.62 43.0 3.12e-01 73.1% 40.7%
3996928 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 51.0 4.76e-01 92.3% 90.8%
4294460 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.62 43.0 2.75e-01 75.0% 15.4%
2526630 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.60 41.0 3.48e-01 73.1% 53.8%
4321682 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.60 50.0 3.79e-01 98.1% 39.3%
4274955 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.60 41.0 2.63e-01 73.1% 15.1%
4035911 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.60 40.0 2.64e-01 71.2% 16.2%
3928042 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 3.42e-01 75.0% 63.0%
3790595 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.58 38.0 3.74e-01 73.1% 61.8%
5057426 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.57 40.0 3.90e-01 76.9% 96.7%
3620647 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 36.0 3.46e-01 71.2% 50.8%
3939702 269.1.1.9 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › PF29320 0.57 40.0 2.81e-01 76.9% 26.4%
3254645 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.56 44.0 3.43e-01 94.2% 36.9%
3458493 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.56 38.0 3.37e-01 73.1% 85.9%
3452790 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.56 46.0 2.87e-01 98.1% 77.6%
4030086 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.56 45.0 3.37e-01 98.1% 34.8%
4188370 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 38.0 2.52e-01 75.0% 16.7%
4199672 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 47.0 3.94e-01 98.1% 65.3%
3614040 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 36.0 3.39e-01 71.2% 82.9%
4509362 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.54 38.0 2.49e-01 78.8% 14.6%
3409292 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.10e-01 75.0% 50.0%