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MH834605.1__AYN57468.1__PBI_CONSTANCE_62__00062
Bact-VirMH834605.1__AYN57468.1__PBI_CONSTANCE_62__00062
Identity
- Accession:
- MH834605 ↗
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Taxonomy
TaxID: 2419950
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-65
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.96 | 91.0 | 6.45e-01 | 100.0% | 52.0% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.90 | 75.0 | 6.57e-01 | 94.0% | 62.9% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.89 | 67.0 | 4.79e-01 | 84.0% | 29.9% |
| 3zgzA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.81 | 54.0 | 3.62e-01 | 70.0% | 22.0% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.80 | 70.0 | 6.39e-01 | 96.0% | 75.0% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.79 | 65.0 | 5.70e-01 | 90.0% | 63.0% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.78 | 58.0 | 4.73e-01 | 80.0% | 43.5% |
| 6nd0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 67.0 | 5.40e-01 | 100.0% | 59.2% |
| 2o35A00 | 1.10.3340.10 | Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like | 0.77 | 55.0 | 4.69e-01 | 76.0% | 55.7% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 52.0 | 3.40e-01 | 72.0% | 17.1% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 58.0 | 5.29e-01 | 82.0% | 74.2% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.75 | 65.0 | 4.77e-01 | 98.0% | 51.9% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.75 | 51.0 | 4.49e-01 | 72.0% | 48.0% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.74 | 63.0 | 5.31e-01 | 98.0% | 55.8% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.73 | 52.0 | 4.16e-01 | 84.0% | 37.6% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.73 | 60.0 | 4.80e-01 | 94.0% | 46.1% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.73 | 57.0 | 4.82e-01 | 90.0% | 51.8% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.72 | 57.0 | 4.75e-01 | 94.0% | 48.5% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.72 | 49.0 | 3.94e-01 | 72.0% | 36.3% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.72 | 60.0 | 5.30e-01 | 96.0% | 64.0% |
| 2zw5A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.71 | 41.0 | 2.81e-01 | 76.0% | 16.7% |
| 3tu3B03 | 1.20.1050.100 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 62.0 | 4.28e-01 | 100.0% | 74.1% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.69 | 56.0 | 5.10e-01 | 92.0% | 67.1% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.69 | 54.0 | 4.55e-01 | 88.0% | 55.8% |
| 3s4lA00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.69 | 52.0 | 3.50e-01 | 84.0% | 21.8% |
| 4c0aA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.68 | 51.0 | 3.98e-01 | 86.0% | 38.1% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 56.0 | 4.51e-01 | 98.0% | 47.6% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.65 | 55.0 | 3.54e-01 | 100.0% | 28.1% |
| 7zh0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.65 | 57.0 | 3.36e-01 | 100.0% | 19.0% |
| 6fijA02 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.64 | 50.0 | 3.07e-01 | 86.0% | 76.6% |
| 2wcjA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.60 | 47.0 | 3.57e-01 | 94.0% | 33.3% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 3.66e-01 | 90.0% | 41.1% |
| 2ft0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 43.0 | 2.88e-01 | 86.0% | 18.5% |
| 1u8xX02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.58 | 45.0 | 2.87e-01 | 86.0% | 59.3% |
| 2ge3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 41.0 | 2.97e-01 | 78.0% | 23.8% |
| 3u5nA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 49.0 | 3.77e-01 | 98.0% | 85.0% |
| 3ziuA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 50.0 | 3.18e-01 | 98.0% | 30.6% |
| 1lxlA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.55 | 45.0 | 2.98e-01 | 94.0% | 56.6% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3992989 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.92 | 85.0 | 5.85e-01 | 100.0% | 33.3% |
| 4789617 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.92 | 82.0 | 6.52e-01 | 100.0% | 52.1% |
| 3404120 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.89 | 81.0 | 5.70e-01 | 100.0% | 38.6% |
| 3284564 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.89 | 74.0 | 5.29e-01 | 98.0% | 33.6% |
| 4955558 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.88 | 64.0 | 5.03e-01 | 76.0% | 40.0% |
| 4975834 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.88 | 63.0 | 4.48e-01 | 76.0% | 28.1% |
| 3518379 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.88 | 72.0 | 6.97e-01 | 88.0% | 90.9% |
| 3642427 | 103.1.1.123 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PLAC8 | 0.87 | 79.0 | 6.56e-01 | 100.0% | 60.0% |
| 2776079 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.86 | 63.0 | 6.05e-01 | 78.0% | 68.4% |
| 3989754 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.86 | 59.0 | 5.21e-01 | 72.0% | 51.4% |
| 3999274 | 5086.1.1.102 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp | 0.85 | 65.0 | 5.02e-01 | 82.0% | 41.9% |
| 3519357 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.85 | 58.0 | 5.30e-01 | 72.0% | 55.4% |
| 4955130 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.85 | 60.0 | 4.88e-01 | 76.0% | 40.9% |
| 3918566 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.82 | 63.0 | 5.41e-01 | 84.0% | 52.5% |
| 4190763 | 103.15.1.2 ↗ | alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S25 | 0.82 | 61.0 | 4.67e-01 | 92.0% | 36.4% |
| 1154435 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.80 | 55.0 | 4.86e-01 | 72.0% | 50.7% |
| 3368926 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.79 | 51.0 | 4.70e-01 | 70.0% | 52.3% |
| 1088836 | 101.38.1.0 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep | 0.78 | 58.0 | 4.33e-01 | 80.0% | 32.8% |
| 4560977 | 5046.1.1.1 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B | 0.76 | 64.0 | 4.55e-01 | 98.0% | 31.2% |
| 185221 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.75 | 65.0 | 5.95e-01 | 98.0% | 73.1% |
| 5055477 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 62.0 | 5.23e-01 | 90.0% | 62.5% |
| 3588902 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.74 | 61.0 | 4.42e-01 | 92.0% | 37.9% |
| 170157 | 4245.1.1.1 ↗ | alpha duplicates or obligate multimers › SMc04008-like › SMc04008-like › SMc04008-like › DUF1244 | 0.74 | 54.0 | 4.33e-01 | 78.0% | 43.9% |
| 5044210 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 50.0 | 4.54e-01 | 72.0% | 51.4% |
| 3222913 | 2498.1.1.5 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N | 0.73 | 59.0 | 3.29e-01 | 92.0% | 6.5% |
| 3601022 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.71 | 60.0 | 3.72e-01 | 98.0% | 33.7% |
| 4332463 | 2003.1.2.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.70 | 59.0 | 3.93e-01 | 100.0% | 38.2% |
| 4241356 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.68 | 52.0 | 4.20e-01 | 82.0% | 43.2% |
| 4107638 | 103.1.1.53 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th | 0.68 | 46.0 | 4.14e-01 | 92.0% | 50.0% |
| 3997165 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.66 | 60.0 | 4.17e-01 | 100.0% | 32.3% |
| 5063799 | 3355.1.1.8 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter | 0.64 | 56.0 | 3.21e-01 | 100.0% | 10.2% |
| 4103293 | 101.1.2.62 ↗ | alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD | 0.64 | 49.0 | 4.32e-01 | 96.0% | 56.2% |
| 3810921 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.63 | 43.0 | 4.10e-01 | 72.0% | 63.3% |
| None | — | 0.62 | 57.0 | 3.50e-01 | 100.0% | 56.4% | |
| 4938179 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.59 | 43.0 | 4.02e-01 | 80.0% | 61.5% |
| 4028002 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.57 | 46.0 | 4.53e-01 | 90.0% | 90.9% |
| 3476467 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.53 | 38.0 | 3.87e-01 | 78.0% | 90.0% |
D2
high
residues 72-127
Domain cluster:
rep: ON045087.1__UPU15914.1__X__00088__D84-142