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MH837542.1__AYN56719.1__X__00014

Bact-Vir

MH837542.1__AYN56719.1__X__00014

Identity

Accession:
MH837542 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-127
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21825.3 best Sequestin 57.4 1.50e-15 84.5% 91.8%
D2 medium residues 1-56
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 5.04e-01 100.0% 60.9%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 4.67e-01 100.0% 56.3%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 4.46e-01 100.0% 52.5%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 55.0 4.01e-01 100.0% 86.7%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.64 55.0 4.70e-01 98.2% 87.1%
4qdjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 54.0 3.73e-01 100.0% 69.7%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.48e-01 100.0% 55.7%
3tm4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 53.0 3.81e-01 100.0% 82.3%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.59e-01 100.0% 67.4%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 53.0 4.49e-01 100.0% 59.6%
2efjA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 3.66e-01 100.0% 43.0%
4bpeC01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 44.0 3.71e-01 98.2% 46.7%
2b78A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 52.0 3.60e-01 100.0% 80.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.21e-01 100.0% 53.0%
3tmaA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 3.74e-01 100.0% 81.9%
3b5iB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 3.44e-01 100.0% 87.8%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.24e-01 100.0% 57.6%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 47.0 3.52e-01 89.3% 57.6%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 50.0 3.51e-01 100.0% 80.6%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 45.0 3.19e-01 100.0% 25.1%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 39.0 3.38e-01 73.2% 50.0%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 47.0 4.37e-01 98.2% 87.0%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 48.0 3.56e-01 100.0% 48.4%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 51.0 3.99e-01 100.0% 51.3%
3lw6A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 47.0 3.22e-01 100.0% 75.1%
3merA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.47e-01 100.0% 90.8%
2vzyC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.30e-01 100.0% 42.3%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 47.0 4.03e-01 100.0% 98.9%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.36e-01 100.0% 46.0%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 46.0 3.91e-01 100.0% 94.0%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.46e-01 100.0% 53.3%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 44.0 3.79e-01 100.0% 58.8%
2fiwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.37e-01 100.0% 48.1%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 46.0 3.37e-01 100.0% 95.9%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 41.0 3.08e-01 85.7% 76.5%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 46.0 3.45e-01 100.0% 40.3%
6j09A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 43.0 4.09e-01 89.3% 100.0%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 37.0 2.67e-01 75.0% 89.7%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 36.0 3.24e-01 91.1% 50.6%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.52 45.0 3.13e-01 100.0% 59.4%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 41.0 3.59e-01 100.0% 59.5%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 40.0 3.48e-01 100.0% 54.9%
2f06A00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 38.0 2.96e-01 100.0% 34.0%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 39.0 3.52e-01 100.0% 60.5%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 41.0 3.61e-01 100.0% 60.7%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 42.0 3.24e-01 100.0% 56.6%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.50 34.0 3.48e-01 75.0% 87.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941955 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 5.66e-01 100.0% 73.3%
4404596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 4.65e-01 100.0% 41.5%
4976186 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 61.0 4.48e-01 100.0% 40.0%
3817779 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.69 47.0 2.93e-01 71.4% 24.1%
4999532 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 60.0 3.96e-01 100.0% 26.4%
5045983 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.68 59.0 4.94e-01 100.0% 64.0%
3420078 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.68 48.0 2.68e-01 73.2% 11.5%
3941591 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.96e-01 96.4% 80.0%
3346465 109.4.1.1371 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif 0.67 46.0 2.67e-01 73.2% 15.3%
3785317 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 57.0 4.52e-01 100.0% 65.0%
3465965 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.66 45.0 2.68e-01 73.2% 17.4%
4978533 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 56.0 4.33e-01 100.0% 46.7%
3960437 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.06e-01 100.0% 35.3%
4961958 5001.1.1.292 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM 0.65 45.0 2.99e-01 73.2% 96.4%
2609 101.1.2.38 alpha arrays › HTH › HTH › winged helix domain › RTP 0.64 57.0 4.46e-01 100.0% 52.5%
3668229 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.64 44.0 2.70e-01 71.4% 21.4%
3200375 101.1.2.569 alpha arrays › HTH › HTH › winged helix domain › PF28722 0.64 56.0 3.59e-01 100.0% 25.5%
4619396 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.63 56.0 3.67e-01 100.0% 31.9%
4272869 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 48.0 4.64e-01 100.0% 73.8%
3564635 2003.1.5.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.62 53.0 3.61e-01 100.0% 71.3%
3173528 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.62 53.0 3.29e-01 98.2% 98.6%
5046881 328.8.1.0 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 0.61 53.0 4.25e-01 98.2% 90.0%
4951172 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 52.0 4.30e-01 100.0% 54.3%
4024901 328.3.1.0 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.60 53.0 4.62e-01 100.0% 97.6%
3453217 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.60 46.0 2.80e-01 83.9% 73.3%
3383244 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.59 44.0 3.52e-01 83.9% 96.0%
5076338 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 51.0 3.60e-01 100.0% 36.8%
3663259 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.59 52.0 3.93e-01 100.0% 48.1%
3667551 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 44.0 3.81e-01 83.9% 91.1%
4026339 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.57 45.0 3.47e-01 92.9% 79.1%
5078475 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 45.0 3.40e-01 89.3% 64.8%
4965043 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.57 48.0 4.38e-01 100.0% 100.0%
3500621 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.56 49.0 2.85e-01 98.2% 92.3%
3286982 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.56 46.0 3.84e-01 94.6% 70.2%
4953273 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 42.0 3.23e-01 85.7% 50.0%
4403911 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.55 44.0 3.67e-01 100.0% 50.0%
3637847 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 44.0 3.79e-01 89.3% 61.1%
5023106 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.55 41.0 2.91e-01 83.9% 44.1%
4237901 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.54 46.0 4.02e-01 100.0% 85.6%
3803370 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 46.0 4.11e-01 98.2% 66.7%
4951898 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 45.0 3.39e-01 100.0% 51.6%
3333863 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.53 44.0 3.51e-01 100.0% 46.4%
4596185 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.53 42.0 3.82e-01 100.0% 64.1%
4611510 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.53 42.0 3.57e-01 100.0% 52.6%
3655967 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 43.0 3.64e-01 100.0% 53.7%
3265492 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.53 46.0 4.38e-01 96.4% 87.7%
4010403 310.3.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM 0.52 43.0 3.80e-01 100.0% 84.9%
4953666 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 41.0 3.24e-01 100.0% 37.2%
4988966 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.52 41.0 3.76e-01 100.0% 65.3%
4282602 327.4.1.1 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.52 42.0 3.60e-01 89.3% 86.7%
4036555 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.52 39.0 3.65e-01 96.4% 63.7%
3461818 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 39.0 2.49e-01 85.7% 77.5%
5009289 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.51 42.0 3.38e-01 100.0% 68.0%
5080307 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.51 35.0 3.85e-01 71.4% 100.0%
3975784 310.3.1.10 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HofO 0.51 42.0 3.72e-01 94.6% 80.0%
3032850 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 38.0 2.83e-01 83.9% 81.5%
3723416 212.1.1.12 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.51 43.0 3.25e-01 96.4% 98.6%
4991070 304.8.1.43 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_5 0.51 39.0 3.67e-01 96.4% 67.1%
3713198 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 41.0 3.11e-01 100.0% 34.8%