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MH837542.1__AYN56731.1__X__00026

Bact-Vir

MH837542.1__AYN56731.1__X__00026

Identity

Accession:
MH837542 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_LR1

TaxID: 2419581

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-108
PDB
Domain cluster: rep: JQ246028.1__AFC61939.1__phi8074-B1_0007__00007__D1-96
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05135.20 best Phage_connect_1 88.0 6.60e-25 95.2% 98.0%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gq2A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 54.0 3.93e-01 98.1% 87.0%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 45.0 3.71e-01 77.7% 43.0%
4oogC01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.61 50.0 4.32e-01 89.3% 88.9%
2vxxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 44.0 3.70e-01 74.8% 77.3%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.61 53.0 4.76e-01 96.1% 80.7%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 44.0 3.69e-01 74.8% 78.9%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.60 45.0 4.42e-01 80.6% 73.2%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.59 53.0 4.72e-01 99.0% 76.6%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.57 37.0 3.96e-01 81.6% 75.6%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.57 40.0 4.07e-01 71.8% 83.2%
7cfmR01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 43.0 3.23e-01 83.5% 44.1%
2dlaA01 1.20.930.50 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.55 40.0 3.45e-01 76.7% 63.1%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.53 36.0 3.90e-01 71.8% 82.8%
5hyhA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.53 45.0 3.31e-01 95.1% 80.5%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 39.0 3.48e-01 76.7% 57.2%
1mw5A01 1.20.272.30 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 36.0 3.29e-01 70.9% 83.4%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.52 39.0 4.12e-01 80.6% 100.0%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.51 38.0 3.70e-01 78.6% 76.1%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.51 42.0 3.65e-01 90.3% 65.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787527 142.3.1.1 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.74 52.0 5.72e-01 73.8% 100.0%
5032434 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.68 61.0 5.95e-01 96.1% 98.2%
4031309 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.67 56.0 5.98e-01 95.1% 100.0%
4441096 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 28.0 3.57e-01 98.1% 65.0%
5055517 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.66 50.0 4.51e-01 80.6% 68.6%
4434200 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.63 50.0 4.93e-01 86.4% 80.0%
3408014 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 50.0 3.83e-01 87.4% 40.9%
3483374 210.1.2.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.61 50.0 4.40e-01 89.3% 78.7%
3487879 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.59 42.0 4.57e-01 72.8% 89.4%
4055 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.59 46.0 3.99e-01 84.5% 63.0%
3739839 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.59 42.0 4.14e-01 74.8% 87.3%
56871 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.58 46.0 3.97e-01 84.5% 63.0%
3764064 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.58 43.0 4.61e-01 78.6% 100.0%
3740697 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.57 45.0 4.60e-01 88.3% 88.0%
5047544 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.56 40.0 3.62e-01 75.7% 88.3%
3740824 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.54 42.0 4.42e-01 89.3% 91.6%
3480403 3361.1.1.0 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 0.54 38.0 3.91e-01 74.8% 82.0%
3248022 601.1.2.80 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Yip1 0.54 46.0 3.92e-01 98.1% 70.6%
3594000 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.53 46.0 3.85e-01 98.1% 68.9%
3832044 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.53 37.0 3.60e-01 71.8% 73.9%
4024467 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.52 45.0 4.12e-01 100.0% 99.3%
4283899 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.52 38.0 3.10e-01 76.7% 86.8%
3166491 193.1.1.0 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.51 35.0 3.33e-01 98.1% 60.0%
3288128 1079.1.1.7 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › SfLAP 0.51 44.0 3.62e-01 93.2% 55.0%
3219809 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.50 36.0 3.55e-01 74.8% 78.2%