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MH853788.1__AYP69027.1__X__00009
Bact-VirMH853788.1__AYP69027.1__X__00009
Identity
- Accession:
- MH853788 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Taxonomy
TaxID: 2419627
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-61
Domain cluster:
rep: MT664721.1__QMP81472.1__X__00015__D3-59
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n0uA03 | 3.90.1430.10 | Alpha Beta › Alpha-Beta Complex › Yeast translation eEF2 (G' domain) › Yeast translation eEF2 (G' domain) | 0.64 | 44.0 | 3.66e-01 | 72.9% | 47.7% |
| 3okyB02 | 3.30.1680.10 | Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 | 0.58 | 38.0 | 3.96e-01 | 74.6% | 75.0% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 45.0 | 3.67e-01 | 96.6% | 64.2% |
| 1adeA03 | 3.90.170.10 | Alpha Beta › Alpha-Beta Complex › Adenylosuccinate Synthetase; Chain A, domain 3 › Adenylosuccinate Synthetase, subunit A, domain 3 | 0.52 | 35.0 | 2.63e-01 | 89.8% | 24.7% |
| 2jubA01 | 3.30.160.860 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 30.0 | 3.50e-01 | 81.4% | 89.2% |
| 4nu0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.88e-01 | 88.1% | 57.1% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.52 | 38.0 | 3.06e-01 | 76.3% | 66.1% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.52 | 41.0 | 3.24e-01 | 98.3% | 40.9% |
| 3fdbA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 35.0 | 2.69e-01 | 76.3% | 74.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596671 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 42.0 | 2.68e-01 | 79.7% | 14.1% |
| 3255895 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.58 | 43.0 | 2.66e-01 | 79.7% | 12.9% |
| 3533652 | 355.1.1.9 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI_PlexinA-B | 0.57 | 42.0 | 4.23e-01 | 78.0% | 83.3% |
| 4876573 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.56 | 41.0 | 2.53e-01 | 78.0% | 14.7% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 2.99e-01 | 84.7% | 58.5% |
| 3188113 | 148.1.3.6 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C,AAA_lid_3 | 0.55 | 38.0 | 3.15e-01 | 74.6% | 87.5% |
| 3316151 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 38.0 | 2.56e-01 | 76.3% | 31.0% |
| 3180884 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 35.0 | 2.68e-01 | 72.9% | 66.9% |
| 3353654 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.52 | 45.0 | 3.21e-01 | 98.3% | 57.3% |
| 3712580 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 30.0 | 2.52e-01 | 93.2% | 33.0% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.51 | 39.0 | 2.83e-01 | 84.7% | 46.9% |
| 4085235 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.51 | 41.0 | 3.19e-01 | 98.3% | 40.6% |
D2
high
residues 62-110
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.80 | 57.0 | 5.12e-01 | 77.6% | 55.2% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.76 | 55.0 | 4.50e-01 | 77.6% | 52.7% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 49.0 | 4.68e-01 | 75.5% | 59.7% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 54.0 | 4.79e-01 | 87.8% | 81.3% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.70 | 59.0 | 3.99e-01 | 95.9% | 32.6% |
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.70 | 53.0 | 3.67e-01 | 83.7% | 39.3% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 49.0 | 4.42e-01 | 77.6% | 76.4% |
| 2nr5A00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.68 | 48.0 | 4.60e-01 | 75.5% | 63.8% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 47.0 | 4.34e-01 | 75.5% | 58.8% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 50.0 | 4.79e-01 | 87.8% | 75.4% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.65 | 55.0 | 4.08e-01 | 95.9% | 72.7% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.64 | 54.0 | 4.35e-01 | 100.0% | 73.8% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 43.0 | 3.94e-01 | 79.6% | 50.0% |
| 3gwnA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.62 | 45.0 | 3.46e-01 | 75.5% | 77.0% |
| 2mmbA00 | 4.10.640.20 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › | 0.62 | 51.0 | 4.06e-01 | 95.9% | 64.5% |
| 2w9mA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.62 | 49.0 | 4.53e-01 | 93.9% | 88.2% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.61 | 51.0 | 4.43e-01 | 95.9% | 89.7% |
| 3ce2A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.61 | 49.0 | 3.59e-01 | 98.0% | 49.4% |
| 1g2nA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.60 | 48.0 | 3.20e-01 | 98.0% | 76.4% |
| 2efjA01 | 1.10.1200.270 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain | 0.60 | 41.0 | 3.02e-01 | 71.4% | 63.4% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 47.0 | 3.62e-01 | 98.0% | 57.0% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.07e-01 | 98.0% | 93.9% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.56 | 42.0 | 3.49e-01 | 95.9% | 91.3% |
| 6vynC01 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.50 | 40.0 | 3.57e-01 | 91.8% | 71.6% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4649366 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.80 | 60.0 | 3.68e-01 | 83.7% | 14.0% |
| 4129138 | 10.12.1.53 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 | 0.79 | 58.0 | 3.68e-01 | 77.6% | 17.0% |
| 5076293 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.78 | 57.0 | 4.90e-01 | 79.6% | 62.5% |
| 3448598 | 3932.1.1.0 ↗ | alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain | 0.78 | 59.0 | 5.57e-01 | 83.7% | 70.0% |
| 4129936 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 58.0 | 4.66e-01 | 81.6% | 82.1% |
| 4965931 | 2007.1.2.57 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF373 | 0.77 | 67.0 | 4.82e-01 | 98.0% | 44.4% |
| 5074496 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.77 | 58.0 | 4.97e-01 | 83.7% | 62.5% |
| 3580914 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.76 | 68.0 | 5.61e-01 | 98.0% | 89.4% |
| 4990191 | 2007.1.2.57 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF373 | 0.76 | 66.0 | 4.78e-01 | 98.0% | 43.7% |
| 5051451 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.76 | 58.0 | 4.75e-01 | 83.7% | 55.6% |
| 5072892 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.75 | 56.0 | 4.54e-01 | 81.6% | 53.7% |
| 5035485 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.75 | 57.0 | 4.26e-01 | 83.7% | 33.9% |
| 4080125 | 616.1.1.45 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › MIS13 | 0.75 | 57.0 | 4.80e-01 | 81.6% | 57.5% |
| 5077884 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.75 | 57.0 | 4.85e-01 | 83.7% | 58.7% |
| 3386373 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.74 | 52.0 | 4.79e-01 | 75.5% | 56.9% |
| 3980428 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.74 | 56.0 | 4.91e-01 | 83.7% | 54.7% |
| 5051841 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.73 | 54.0 | 4.55e-01 | 79.6% | 60.0% |
| 4948638 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.73 | 55.0 | 4.67e-01 | 83.7% | 59.5% |
| 4031046 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.73 | 51.0 | 4.82e-01 | 75.5% | 61.7% |
| 4013888 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 63.0 | 4.40e-01 | 98.0% | 41.9% |
| 5051839 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.72 | 54.0 | 4.62e-01 | 81.6% | 66.3% |
| 4674 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.71 | 49.0 | 4.61e-01 | 75.5% | 56.9% |
| 5040477 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.71 | 60.0 | 4.41e-01 | 93.9% | 54.4% |
| 5065296 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.71 | 55.0 | 5.22e-01 | 87.8% | 96.7% |
| 3389960 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.71 | 62.0 | 5.19e-01 | 100.0% | 75.3% |
| 165995 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.71 | 54.0 | 4.79e-01 | 87.8% | 81.3% |
| 5032368 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.70 | 56.0 | 5.08e-01 | 87.8% | 93.8% |
| 3775580 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.70 | 52.0 | 4.63e-01 | 83.7% | 58.7% |
| 3202914 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.67 | 46.0 | 4.47e-01 | 75.5% | 61.7% |
| 3262581 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.67 | 57.0 | 4.03e-01 | 100.0% | 87.3% |
| 4929706 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.67 | 50.0 | 4.58e-01 | 87.8% | 87.1% |
| 3820264 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.66 | 47.0 | 3.10e-01 | 81.6% | 17.6% |
| 3386010 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.62 | 50.0 | 2.88e-01 | 98.0% | 12.1% |
| 3731062 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.61 | 48.0 | 4.06e-01 | 89.8% | 82.4% |
| 3614452 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.60 | 49.0 | 4.15e-01 | 98.0% | 81.1% |
| 3163939 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.53 | 41.0 | 4.18e-01 | 98.0% | 100.0% |
| 3231843 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.52 | 35.0 | 3.15e-01 | 71.4% | 53.3% |