←Back to structures

MH884508.1__AYP68196.1__vBBcoS136_00064__00064

Bact-Vir

MH884508.1__AYP68196.1__vBBcoS136_00064__00064

Identity

Accession:
MH884508 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kenyattavirus› Bacillus_phage_vB_BcoS-136

TaxID: 2419619

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-61
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 63.0 5.94e-01 100.0% 72.3%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 6.15e-01 100.0% 79.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 6.55e-01 100.0% 100.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 6.41e-01 100.0% 98.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.75 66.0 4.99e-01 100.0% 47.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 4.98e-01 100.0% 50.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.66e-01 98.1% 79.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 4.62e-01 100.0% 39.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.69e-01 100.0% 72.4%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.72 66.0 5.14e-01 100.0% 52.3%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.59e-01 100.0% 80.6%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 55.0 3.86e-01 88.9% 68.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.55e-01 100.0% 83.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.53e-01 100.0% 79.2%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 5.44e-01 100.0% 87.9%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 4.37e-01 100.0% 39.8%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 56.0 3.86e-01 100.0% 37.6%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 56.0 3.56e-01 100.0% 26.8%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.82e-01 100.0% 65.1%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.13e-01 100.0% 60.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.06e-01 100.0% 98.1%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 51.0 5.10e-01 92.6% 89.3%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 4.75e-01 87.0% 87.5%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.16e-01 100.0% 100.0%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.62 41.0 3.75e-01 70.4% 52.1%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 44.0 4.06e-01 83.3% 58.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.61 47.0 4.65e-01 100.0% 86.0%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 48.0 3.34e-01 88.9% 71.2%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.28e-01 87.0% 74.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.61e-01 100.0% 78.7%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.56e-01 100.0% 89.6%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.58 45.0 4.07e-01 92.6% 69.1%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.09e-01 96.3% 58.5%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.11e-01 98.1% 48.6%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.57 46.0 3.37e-01 96.3% 33.7%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.44e-01 79.6% 95.6%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 47.0 4.73e-01 100.0% 96.4%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.67e-01 81.5% 70.5%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 45.0 3.19e-01 98.1% 29.8%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 43.0 3.20e-01 90.7% 38.4%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.97e-01 98.1% 57.6%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 45.0 3.66e-01 100.0% 51.8%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.60e-01 96.3% 60.2%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.40e-01 88.9% 84.6%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 35.0 2.43e-01 72.2% 18.5%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 3.84e-01 100.0% 74.7%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 40.0 3.24e-01 100.0% 88.7%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.78 69.0 5.54e-01 100.0% 59.0%
3829476 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 69.0 4.79e-01 100.0% 37.7%
3451175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 63.0 6.30e-01 100.0% 87.3%
3821287 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.77 67.0 5.00e-01 100.0% 44.3%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.77 67.0 4.79e-01 100.0% 39.4%
4272564 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.76 67.0 5.36e-01 100.0% 57.4%
3184235 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.76 67.0 4.91e-01 100.0% 40.0%
3738626 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.76 66.0 4.89e-01 100.0% 43.4%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 60.0 5.81e-01 100.0% 78.3%
3786396 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.76 66.0 5.03e-01 100.0% 44.6%
3947700 4.8.1.25 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB 0.75 67.0 6.38e-01 100.0% 88.9%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 63.0 6.23e-01 100.0% 87.7%
3167531 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.75 66.0 4.94e-01 100.0% 45.9%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.75 65.0 4.29e-01 100.0% 27.0%
3575581 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.75 65.0 4.63e-01 100.0% 37.6%
4422252 4.1.1.455 ↗ beta barrels › SH3 › SH3 › SH3 › DSRB 0.74 66.0 6.38e-01 100.0% 93.3%
3477401 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.74 65.0 4.21e-01 100.0% 25.3%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.17e-01 100.0% 57.3%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 62.0 4.94e-01 100.0% 46.4%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.38e-01 100.0% 58.9%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 60.0 5.03e-01 100.0% 53.3%
3730011 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.74 64.0 4.77e-01 100.0% 40.0%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 6.24e-01 100.0% 98.0%
3642926 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 64.0 4.42e-01 100.0% 39.5%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 62.0 4.92e-01 100.0% 47.6%
3510786 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 60.0 5.69e-01 100.0% 76.9%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.73 64.0 5.25e-01 100.0% 55.0%
3907190 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.73 64.0 5.31e-01 100.0% 58.9%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.72 60.0 5.14e-01 100.0% 56.7%
3637508 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.72 61.0 5.78e-01 100.0% 78.5%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 57.0 4.87e-01 100.0% 53.3%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.80e-01 100.0% 87.3%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 55.0 4.66e-01 100.0% 49.5%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.34e-01 100.0% 66.7%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.68e-01 100.0% 87.0%
2527304 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.71 61.0 5.87e-01 100.0% 85.2%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 60.0 5.00e-01 100.0% 55.0%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 61.0 5.52e-01 100.0% 72.0%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 4.90e-01 100.0% 56.7%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 61.0 4.23e-01 100.0% 30.6%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 61.0 5.28e-01 100.0% 63.5%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 60.0 5.33e-01 100.0% 67.5%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 58.0 5.04e-01 100.0% 62.2%
4966163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 4.98e-01 100.0% 64.0%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.69 57.0 5.08e-01 100.0% 63.0%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 4.66e-01 100.0% 44.2%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.69 59.0 4.92e-01 100.0% 73.0%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 60.0 5.43e-01 100.0% 72.0%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.68 59.0 4.97e-01 100.0% 61.1%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 59.0 5.62e-01 100.0% 83.1%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.98e-01 100.0% 70.0%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 59.0 5.02e-01 100.0% 60.0%
3431172 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 58.0 3.81e-01 100.0% 35.9%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 57.0 4.77e-01 100.0% 66.0%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.68 58.0 5.21e-01 100.0% 69.3%
2127246 4.8.1.4 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MBT 0.68 57.0 5.29e-01 100.0% 75.4%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 57.0 4.64e-01 100.0% 52.7%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.67 57.0 5.37e-01 100.0% 79.4%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.66 55.0 4.83e-01 98.1% 78.8%
3772638 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.66 56.0 4.98e-01 100.0% 66.7%
3448400 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 55.0 3.64e-01 100.0% 42.0%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.65 57.0 5.29e-01 100.0% 77.1%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.10e-01 100.0% 78.5%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 56.0 4.88e-01 100.0% 65.9%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.70e-01 100.0% 55.8%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.65 55.0 5.12e-01 100.0% 81.4%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.05e-01 100.0% 81.3%
5055172 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.64 51.0 5.12e-01 92.6% 89.1%
2541236 3820.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.63 52.0 4.49e-01 100.0% 75.0%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.02e-01 100.0% 86.7%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.63 52.0 5.08e-01 100.0% 90.0%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.10e-01 100.0% 98.2%
3333339 4.8.1.34 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_SEND1 0.61 47.0 4.48e-01 85.2% 70.8%
3370313 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.59 47.0 3.55e-01 100.0% 52.1%
3579992 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 44.0 3.37e-01 100.0% 50.3%
3783168 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.54 42.0 2.70e-01 96.3% 48.8%
D2 high residues 67-180
PDB
Domain cluster: rep: KU640380.1__AMQ66536.1__X__00054__D7-109