←Back to structures
MH884508.1__AYP68345.1__vBBcoS136_00231__00213
Bact-VirMH884508.1__AYP68345.1__vBBcoS136_00231__00213
Identity
- Accession:
- MH884508 ↗
- Kingdom:
- phage
Quality
69.8
mean pLDDT
Taxonomy
TaxID: 2419619
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-75
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fgeA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 40.0 | 2.78e-01 | 70.0% | 47.0% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 41.0 | 3.59e-01 | 74.3% | 84.7% |
| 2jl8102 | 3.30.160.850 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 37.0 | 4.18e-01 | 80.0% | 100.0% |
| 2vrwB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 39.0 | 3.31e-01 | 74.3% | 76.0% |
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.56 | 43.0 | 4.14e-01 | 100.0% | 72.8% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.54 | 40.0 | 3.10e-01 | 80.0% | 79.5% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.54 | 44.0 | 4.36e-01 | 94.3% | 92.2% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.53 | 43.0 | 3.89e-01 | 90.0% | 67.0% |
| 1flcB00 | 3.90.20.10 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › | 0.53 | 40.0 | 3.13e-01 | 82.9% | 84.0% |
| 2ctkA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 35.0 | 3.18e-01 | 70.0% | 68.3% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.52 | 46.0 | 3.95e-01 | 100.0% | 81.1% |
| 1t0fA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 44.0 | 3.41e-01 | 95.7% | 79.0% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 33.0 | 3.41e-01 | 74.3% | 69.2% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.51 | 42.0 | 3.26e-01 | 100.0% | 89.1% |
| 5xyib00 | 2.20.25.100 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 | 0.51 | 31.0 | 2.97e-01 | 84.3% | 51.2% |
| 2aw4Z00 | 4.10.830.30 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 | 0.51 | 42.0 | 4.25e-01 | 95.7% | 94.3% |
| 2czrA02 | 3.90.79.30 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain | 0.51 | 37.0 | 3.14e-01 | 78.6% | 84.2% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.04e-01 | 70.0% | 84.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4293536 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.70 | 46.0 | 5.17e-01 | 98.6% | 94.0% |
| 4421975 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.69 | 47.0 | 5.19e-01 | 100.0% | 90.9% |
| 4886440 | 4232.1.2.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Mitoribosomal protein bL28m › Ribosomal_L28 | 0.67 | 47.0 | 4.79e-01 | 100.0% | 74.3% |
| 4096542 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.67 | 47.0 | 5.12e-01 | 98.6% | 94.5% |
| 4048122 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.66 | 44.0 | 3.63e-01 | 70.0% | 91.5% |
| 4119116 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.66 | 47.0 | 4.68e-01 | 98.6% | 72.0% |
| 4342292 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.66 | 46.0 | 5.04e-01 | 98.6% | 94.5% |
| 4114709 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.65 | 47.0 | 4.65e-01 | 98.6% | 72.0% |
| 4314014 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.65 | 47.0 | 4.57e-01 | 100.0% | 68.8% |
| 4306719 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 44.0 | 4.61e-01 | 91.4% | 78.5% |
| 4261344 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.59 | 38.0 | 4.08e-01 | 85.7% | 76.7% |
| 3931251 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.59 | 49.0 | 3.28e-01 | 95.7% | 78.7% |
| 3080542 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.58 | 51.0 | 4.70e-01 | 100.0% | 91.2% |
| 4023020 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.57 | 39.0 | 3.73e-01 | 71.4% | 88.7% |
| 3800979 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.56 | 40.0 | 3.71e-01 | 74.3% | 82.2% |
| 4284613 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.56 | 47.0 | 4.58e-01 | 94.3% | 91.0% |
| 4242930 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.55 | 46.0 | 4.29e-01 | 94.3% | 93.3% |
| 4118860 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.55 | 48.0 | 4.28e-01 | 98.6% | 74.0% |
| 4090099 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.54 | 47.0 | 4.38e-01 | 98.6% | 95.5% |
| 3248699 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.54 | 46.0 | 4.03e-01 | 100.0% | 70.0% |
| 4210619 | 323.1.1.33 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PF27279 | 0.53 | 45.0 | 2.93e-01 | 100.0% | 55.1% |
| 5023773 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.53 | 30.0 | 2.32e-01 | 87.1% | 21.7% |
| 3194943 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.52 | 42.0 | 2.99e-01 | 91.4% | 90.6% |
| 4785127 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.52 | 44.0 | 3.56e-01 | 100.0% | 51.3% |
| 3649408 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.52 | 44.0 | 4.28e-01 | 98.6% | 89.7% |
| 3251228 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 35.0 | 2.90e-01 | 72.9% | 64.1% |
| 3576004 | 859.1.1.3 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 | 0.51 | 41.0 | 3.04e-01 | 94.3% | 86.4% |
| 3606980 | 2484.1.1.300 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Aminotran_1_2 | 0.50 | 39.0 | 3.04e-01 | 85.7% | 92.7% |
| 2979124 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.50 | 43.0 | 3.62e-01 | 100.0% | 60.5% |
| 3601040 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.50 | 43.0 | 3.14e-01 | 98.6% | 36.6% |
| 3438090 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.50 | 43.0 | 3.24e-01 | 100.0% | 42.7% |