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MH884510.1__AYP68497.1__EalM137_00047__00047

Bact-Vir

MH884510.1__AYP68497.1__EalM137_00047__00047

Identity

Accession:
MH884510 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-42
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.93 76.0 4.93e-01 100.0% 22.2%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.89 79.0 6.96e-01 100.0% 81.0%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.87 74.0 6.75e-01 100.0% 73.1%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.85 74.0 6.48e-01 100.0% 86.7%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.81 69.0 4.08e-01 100.0% 13.8%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.80 69.0 5.90e-01 100.0% 69.7%
6f0cA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.79 54.0 3.08e-01 72.5% 14.6%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.77 62.0 6.07e-01 100.0% 91.3%
6rawN02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.74 60.0 5.57e-01 100.0% 85.5%
5l92A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.73 50.0 2.88e-01 72.5% 14.5%
3rwlA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.71 49.0 2.77e-01 72.5% 14.1%
1io7A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.71 49.0 2.80e-01 72.5% 15.3%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.14e-01 100.0% 76.6%
4tpoA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.69 51.0 2.91e-01 80.0% 14.6%
3wecA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 50.0 2.87e-01 80.0% 13.7%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 4.72e-01 100.0% 77.6%
3oo3A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 47.0 2.69e-01 72.5% 13.7%
4l0fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 46.0 2.60e-01 72.5% 12.8%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.64 48.0 3.47e-01 80.0% 65.8%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 41.0 2.82e-01 72.5% 68.6%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.50 39.0 3.18e-01 90.0% 88.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994655 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.95 88.0 8.05e-01 100.0% 94.0%
4935547 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.94 87.0 7.96e-01 100.0% 92.0%
4025462 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.93 79.0 6.81e-01 100.0% 61.7%
5069341 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.93 85.0 7.79e-01 100.0% 92.0%
4932084 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.92 85.0 7.80e-01 100.0% 92.0%
5028408 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.92 86.0 7.85e-01 100.0% 94.0%
4939413 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.92 82.0 7.60e-01 97.5% 96.0%
3716713 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.92 84.0 7.72e-01 100.0% 92.0%
4967982 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.92 85.0 8.23e-01 100.0% 100.0%
4956745 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.92 85.0 7.79e-01 100.0% 92.0%
4956746 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.92 84.0 7.75e-01 100.0% 94.0%
5055750 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.92 84.0 7.75e-01 100.0% 92.0%
4991614 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.91 83.0 7.40e-01 100.0% 76.4%
4927873 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.91 83.0 7.15e-01 100.0% 73.3%
4358525 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.91 82.0 7.53e-01 97.5% 86.0%
4973337 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.91 82.0 7.31e-01 100.0% 83.6%
5010674 4076.3.1.11 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 0.91 81.0 7.24e-01 100.0% 72.7%
5042275 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.90 81.0 7.24e-01 100.0% 85.5%
4081421 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.90 82.0 7.59e-01 100.0% 92.0%
4024535 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.88 74.0 6.64e-01 100.0% 67.3%
5063665 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.88 79.0 7.59e-01 97.5% 93.3%
5011186 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.88 77.0 6.75e-01 100.0% 75.0%
3788443 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.88 75.0 6.97e-01 100.0% 76.0%
3601134 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.87 76.0 6.23e-01 100.0% 55.7%
4230268 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.86 75.0 7.19e-01 95.0% 95.6%
4932061 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.84 73.0 7.05e-01 97.5% 95.6%
1346119 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.83 72.0 6.67e-01 100.0% 86.3%
4536596 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.82 74.0 6.95e-01 100.0% 91.7%
4641420 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.82 71.0 5.46e-01 100.0% 48.9%
4269273 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.82 68.0 6.58e-01 95.0% 95.6%
5068408 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.81 73.0 7.01e-01 100.0% 95.6%
4169249 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.81 72.0 6.80e-01 100.0% 91.7%
2543111 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.80 65.0 5.99e-01 100.0% 70.4%
5009 4076.3.1.2 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.77 62.0 5.97e-01 100.0% 85.7%
3958220 149.1.1.0 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.76 52.0 3.12e-01 72.5% 21.6%
4032281 268.2.1.1 a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr 0.68 57.0 3.47e-01 100.0% 20.4%
3957920 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.68 50.0 2.92e-01 80.0% 17.3%
3485667 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.68 57.0 4.73e-01 100.0% 69.3%
3902139 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.68 58.0 4.88e-01 100.0% 74.3%
4244236 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.65 52.0 3.95e-01 97.5% 46.4%
3893368 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.65 55.0 4.78e-01 100.0% 80.0%
4950136 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.64 44.0 3.59e-01 72.5% 96.0%
5011090 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.64 43.0 3.59e-01 72.5% 96.0%
3623139 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.63 45.0 2.82e-01 77.5% 52.4%
2127686 275.1.1.4 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_5 0.58 46.0 3.39e-01 100.0% 47.3%
4396206 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.53 42.0 3.87e-01 100.0% 70.0%
4397359 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 45.0 2.65e-01 95.0% 20.6%
4578662 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.51 42.0 3.82e-01 100.0% 71.7%
4937798 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.51 38.0 3.21e-01 90.0% 75.3%
3811646 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.50 42.0 3.26e-01 100.0% 58.0%
4270226 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.50 40.0 3.80e-01 100.0% 81.8%
4642508 4958.1.1.1 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.50 39.0 2.41e-01 87.5% 22.0%
3889037 10.12.1.51 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.50 38.0 2.50e-01 90.0% 66.4%
D2 high residues 55-112
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.76 56.0 5.46e-01 87.9% 71.2%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.27e-01 93.1% 71.2%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 39.0 3.24e-01 72.4% 86.1%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.78e-01 77.6% 75.7%
1x9bA00 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.55 32.0 3.37e-01 79.3% 62.3%
6ianC01 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.54 45.0 3.71e-01 100.0% 89.2%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 40.0 3.82e-01 86.2% 93.3%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.54 45.0 3.94e-01 100.0% 90.7%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.81e-01 98.3% 68.1%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.52 43.0 3.33e-01 98.3% 57.9%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 42.0 3.06e-01 96.6% 34.6%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 3.06e-01 91.4% 56.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934734 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.80 58.0 6.46e-01 77.6% 100.0%
3440159 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.72 54.0 4.80e-01 82.8% 56.5%
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.66 51.0 5.26e-01 91.4% 92.7%
3690457 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.65 53.0 5.31e-01 93.1% 96.7%
3432916 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.59 40.0 4.13e-01 70.7% 74.5%
3444874 3788.1.1.14 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › DUF247 0.58 44.0 3.93e-01 87.9% 56.5%
5045179 3696.1.1.5 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › Helicase_C_3 0.56 46.0 3.81e-01 96.6% 86.1%
5045542 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.55 38.0 2.74e-01 75.9% 70.0%
3248091 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.53 38.0 3.50e-01 81.0% 94.1%
3234099 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.53 37.0 3.59e-01 74.1% 81.5%
3198596 592.1.1.6 alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.51 42.0 3.70e-01 98.3% 86.3%
3242228 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.51 35.0 2.92e-01 75.9% 59.2%