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MH884511.1__AYP68591.1__EalM132_00079__00077

Bact-Vir

MH884511.1__AYP68591.1__EalM132_00079__00077

Identity

Accession:
MH884511 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-120
PDB
D2 high residues 144-243
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.70 51.0 5.30e-01 100.0% 83.7%
4p02B02 3.30.379.20 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › 0.51 32.0 3.06e-01 89.0% 53.3%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 23.0 2.85e-01 84.0% 68.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980571 4334.1.1.1 beta complex topology › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Peptidase_S13 0.60 34.0 3.71e-01 93.0% 67.5%
3904669 827.1.1.0 a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain 0.55 31.0 3.79e-01 82.0% 90.0%
1693521 4334.1.1.1 beta complex topology › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Peptidase_S13 0.55 32.0 3.42e-01 93.0% 64.7%
3561026 1086.1.1.4 beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › ASTN_1_2_N 0.53 30.0 2.86e-01 87.0% 44.9%
3390011 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.52 40.0 3.19e-01 100.0% 39.4%
D3 high residues 470-605
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00877.26 best NLPC_P60 91.0 6.40e-26 83.8% 99.1%
D4 high residues 628-740
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06725.18 best 3D 47.2 3.00e-12 49.6% 69.4%
D5 medium residues 248-436
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.78 40.0 5.65e-01 92.1% 100.0%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.77 35.0 3.72e-01 88.4% 48.8%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.73 36.0 3.84e-01 91.0% 52.9%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.68 32.0 3.17e-01 90.5% 41.3%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.68 29.0 4.57e-01 85.7% 98.7%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.64 20.0 2.84e-01 77.8% 53.7%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 28.0 3.91e-01 84.1% 81.7%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 28.0 3.65e-01 85.2% 72.1%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 30.0 3.61e-01 87.8% 69.4%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 29.0 3.78e-01 87.3% 79.0%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.58 24.0 3.22e-01 93.7% 70.8%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 29.0 3.28e-01 87.8% 61.9%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 26.0 3.33e-01 86.8% 72.1%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.56 25.0 3.17e-01 85.2% 64.7%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 26.0 3.40e-01 85.2% 78.4%
2nzcB00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.55 21.0 3.18e-01 80.4% 81.5%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.55 23.0 2.61e-01 86.2% 48.9%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 30.0 3.92e-01 85.7% 93.6%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 25.0 3.24e-01 82.5% 74.1%
4rm7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.54 28.0 3.61e-01 86.2% 87.2%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.53 28.0 3.79e-01 86.8% 100.0%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 23.0 3.13e-01 82.0% 77.4%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 29.0 3.81e-01 89.9% 100.0%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 24.0 3.12e-01 78.8% 74.5%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.52 26.0 3.36e-01 93.7% 83.8%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 24.0 3.11e-01 78.8% 75.2%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 25.0 2.97e-01 86.2% 65.6%
4x28C02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.51 27.0 3.55e-01 87.3% 93.1%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 3.57e-01 85.7% 95.8%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.50 30.0 3.81e-01 92.1% 100.0%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 23.0 3.00e-01 97.9% 76.0%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 24.0 3.08e-01 82.0% 77.7%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.50 31.0 3.68e-01 91.0% 91.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 38.0 5.76e-01 87.3% 100.0%
3973341 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 36.0 5.62e-01 91.5% 100.0%
4647050 1.1.13.56 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.79 34.0 5.23e-01 85.7% 96.2%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 36.0 5.35e-01 92.6% 100.0%
4031753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 34.0 4.84e-01 90.5% 86.3%
4033372 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 34.0 4.45e-01 84.7% 78.2%
3187986 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 25.0 3.42e-01 77.8% 58.1%
4929759 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 58.0 6.31e-01 86.8% 100.0%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 33.0 4.04e-01 85.7% 67.2%
4995816 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 36.0 5.12e-01 89.4% 100.0%
5056723 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 30.0 4.19e-01 88.4% 80.0%
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.69 35.0 4.85e-01 87.8% 96.8%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.69 31.0 4.30e-01 88.4% 84.2%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.68 28.0 3.71e-01 86.2% 66.4%
1914511 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 31.0 3.80e-01 87.8% 64.6%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.68 31.0 4.45e-01 84.1% 91.1%
1871771 1.1.5.43 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.68 29.0 3.68e-01 86.2% 65.8%
3387966 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 27.0 3.99e-01 84.7% 82.4%
3971461 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 28.0 3.92e-01 83.6% 80.0%
2137681 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 29.0 3.87e-01 87.8% 73.4%
2475125 3071.1.1.7 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.66 49.0 5.38e-01 86.8% 92.4%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.65 29.0 3.53e-01 84.7% 63.3%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 30.0 3.74e-01 86.2% 70.4%
4889790 3071.1.1.7 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.64 52.0 5.56e-01 86.8% 96.4%
3917151 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.64 27.0 3.84e-01 83.6% 80.0%
4402697 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 31.0 3.80e-01 86.8% 71.7%
4094235 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 31.0 3.76e-01 86.8% 69.6%
4551243 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 30.0 3.70e-01 86.2% 69.6%
3909822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 32.0 4.19e-01 84.7% 87.3%
4217523 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 30.0 3.69e-01 86.8% 70.4%
3973696 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 29.0 3.49e-01 87.3% 66.4%
4562905 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.61 30.0 3.61e-01 86.8% 69.6%
4273561 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.60 30.0 3.56e-01 86.8% 66.7%
3973282 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.59 30.0 3.78e-01 88.4% 80.0%
3207682 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 31.0 3.61e-01 86.8% 67.9%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 30.0 3.49e-01 86.2% 69.2%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 31.0 3.88e-01 84.7% 85.2%
4538400 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 29.0 3.50e-01 86.2% 71.5%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 36.0 4.35e-01 86.8% 93.1%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.57 34.0 4.24e-01 87.3% 95.7%
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 30.0 3.84e-01 87.8% 86.4%
4987588 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.55 24.0 3.29e-01 88.4% 78.9%
3220599 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 27.0 3.27e-01 86.8% 69.9%
3256399 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.54 27.0 3.16e-01 87.3% 66.2%
3263394 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 26.0 3.06e-01 87.3% 65.4%
4954540 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 31.0 3.99e-01 90.5% 99.1%
4597893 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 29.0 3.81e-01 91.5% 100.0%
416478 872.3.1.3 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › RcsF 0.52 26.0 3.36e-01 93.7% 83.8%
4030972 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.52 30.0 3.75e-01 87.3% 91.7%
3602499 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.51 31.0 3.67e-01 87.3% 86.2%
3391409 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 29.0 3.13e-01 87.3% 63.9%
5001719 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.51 31.0 3.92e-01 89.4% 100.0%
3277296 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.50 25.0 2.96e-01 86.8% 65.4%