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MH884512.1__AZS49249.1__BpsS140_00056__00056
Bact-VirMH884512.1__AZS49249.1__BpsS140_00056__00056
Identity
- Accession:
- MH884512 ↗
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-116
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c1dB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 26.0 | 3.34e-01 | 87.1% | 80.6% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 33.0 | 3.52e-01 | 97.4% | 74.7% |
| 3fm9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 31.0 | 3.64e-01 | 87.9% | 91.0% |
| 1pyoB00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.50 | 32.0 | 3.41e-01 | 71.6% | 74.5% |
D2
medium
residues 117-181
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 56.0 | 5.43e-01 | 72.3% | 63.4% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.82 | 58.0 | 4.43e-01 | 73.8% | 35.3% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.78 | 63.0 | 5.10e-01 | 86.2% | 52.1% |
| 5dz2A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.77 | 56.0 | 3.51e-01 | 76.9% | 21.7% |
| 1ym3A00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.75 | 51.0 | 3.59e-01 | 70.8% | 63.7% |
| 2ozbB01 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 57.0 | 4.46e-01 | 80.0% | 58.8% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.73 | 50.0 | 4.80e-01 | 75.4% | 61.8% |
| 1b8dA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.72 | 49.0 | 3.61e-01 | 70.8% | 32.3% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.71 | 51.0 | 4.64e-01 | 76.9% | 57.6% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 50.0 | 4.44e-01 | 81.5% | 53.8% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.67 | 44.0 | 3.81e-01 | 72.3% | 41.7% |
| 3nrkA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.66 | 55.0 | 3.97e-01 | 95.4% | 35.6% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 44.0 | 4.59e-01 | 72.3% | 78.0% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 44.0 | 3.27e-01 | 73.8% | 26.4% |
| 5eroA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 47.0 | 2.99e-01 | 81.5% | 32.2% |
| 1kn1B00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.60 | 45.0 | 3.31e-01 | 78.5% | 32.3% |
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.60 | 42.0 | 4.10e-01 | 75.4% | 90.1% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 44.0 | 3.90e-01 | 92.3% | 73.5% |
| 3pe8A00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.50 | 38.0 | 2.62e-01 | 78.5% | 62.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3167354 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.80 | 54.0 | 5.22e-01 | 76.9% | 63.0% |
| 3699443 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.79 | 60.0 | 4.88e-01 | 80.0% | 46.1% |
| 5064428 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.78 | 56.0 | 3.83e-01 | 75.4% | 50.9% |
| 3680555 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.78 | 65.0 | 5.69e-01 | 90.8% | 62.1% |
| 5010597 | 5058.1.1.99 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF373 | 0.77 | 56.0 | 4.34e-01 | 87.7% | 35.7% |
| 3676390 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.77 | 58.0 | 4.69e-01 | 80.0% | 45.8% |
| 4162384 | 633.23.1.37 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 | 0.77 | 59.0 | 3.91e-01 | 81.5% | 84.7% |
| 3973453 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.72 | 55.0 | 5.16e-01 | 93.8% | 66.3% |
| 3227811 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.72 | 56.0 | 4.19e-01 | 83.1% | 67.1% |
| 4332824 | 106.1.1.2 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome | 0.72 | 49.0 | 3.63e-01 | 70.8% | 33.1% |
| 51280 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.72 | 49.0 | 3.61e-01 | 70.8% | 32.9% |
| 3244958 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 45.0 | 4.58e-01 | 72.3% | 64.6% |
| 3588332 | 5069.1.1.23 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF2798 | 0.69 | 52.0 | 4.06e-01 | 81.5% | 68.6% |
| 4024271 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.68 | 56.0 | 4.48e-01 | 95.4% | 45.2% |
| 158467 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.68 | 54.0 | 3.33e-01 | 90.8% | 13.9% |
| 4025147 | 109.4.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › 14-3-3 | 0.67 | 59.0 | 3.68e-01 | 92.3% | 23.7% |
| 3569625 | 604.12.1.4 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 | 0.66 | 56.0 | 4.15e-01 | 92.3% | 40.0% |
| 4275568 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.64 | 40.0 | 3.99e-01 | 72.3% | 58.6% |
| 5028389 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.63 | 46.0 | 2.92e-01 | 80.0% | 71.1% |
| 3929220 | 109.4.1.63 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 | 0.62 | 52.0 | 3.59e-01 | 95.4% | 69.6% |
| 3686779 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 46.0 | 3.22e-01 | 86.2% | 27.4% |
| 3739404 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.58 | 43.0 | 2.88e-01 | 78.5% | 62.0% |
| 3568856 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.54 | 43.0 | 3.91e-01 | 89.2% | 81.1% |