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MH892377.1__AYP30098.1__SWK1_026__00026
Bact-VirMH892377.1__AYP30098.1__SWK1_026__00026
Identity
- Accession:
- MH892377 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Aliceevansviridae›
Moineauvirus›
Streptococcus_phage_SWK1
TaxID: 2419658
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-80
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 52.0 | 3.75e-01 | 90.5% | 32.3% |
| 4aurA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 53.0 | 3.57e-01 | 90.5% | 31.0% |
| 5iipA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.60 | 37.0 | 3.16e-01 | 98.6% | 38.8% |
| 1sgvA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.58 | 41.0 | 4.35e-01 | 100.0% | 85.7% |
| 5klkB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 47.0 | 3.16e-01 | 94.6% | 92.7% |
| 7tjhE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.68e-01 | 100.0% | 61.8% |
| 3vseA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.53 | 43.0 | 4.49e-01 | 100.0% | 95.7% |
| 3c0kA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.51 | 43.0 | 4.39e-01 | 100.0% | 94.4% |
| 6ktqA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 42.0 | 2.87e-01 | 97.3% | 24.2% |
| 4gywA05 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 36.0 | 2.85e-01 | 97.3% | 34.8% |
| 1e4eA03 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 36.0 | 3.14e-01 | 100.0% | 46.7% |
| 3bleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 41.0 | 2.79e-01 | 95.9% | 22.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005780 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.67 | 46.0 | 4.12e-01 | 95.9% | 50.5% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.66 | 58.0 | 3.53e-01 | 100.0% | 42.0% |
| 4026782 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.65 | 49.0 | 3.91e-01 | 79.7% | 46.9% |
| 3395104 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.65 | 56.0 | 4.54e-01 | 100.0% | 50.7% |
| 3404978 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.65 | 56.0 | 3.64e-01 | 97.3% | 28.1% |
| 2754119 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.64 | 55.0 | 3.52e-01 | 95.9% | 27.1% |
| 5013125 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.64 | 47.0 | 4.34e-01 | 90.5% | 61.1% |
| 3697816 | 2008.1.1.99 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 | 0.63 | 55.0 | 4.16e-01 | 98.6% | 42.4% |
| 3467638 | 207.1.1.143 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 | 0.62 | 42.0 | 2.58e-01 | 100.0% | 10.4% |
| 4237622 | 1.1.9.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C | 0.60 | 43.0 | 4.73e-01 | 100.0% | 95.0% |
| 4278595 | 1.1.9.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C | 0.59 | 41.0 | 4.62e-01 | 100.0% | 98.2% |
| 4583141 | 2008.1.1.134 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › XhoI | 0.58 | 50.0 | 3.84e-01 | 95.9% | 42.4% |
| 4058737 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 40.0 | 4.42e-01 | 100.0% | 88.3% |
| 4240947 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 47.0 | 4.81e-01 | 100.0% | 94.3% |
| None | — | 0.57 | 41.0 | 2.74e-01 | 98.6% | 17.1% | |
| 4133629 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 43.0 | 4.69e-01 | 100.0% | 100.0% |
| 3656902 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.57 | 48.0 | 4.32e-01 | 100.0% | 70.4% |
| 3712235 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.55 | 48.0 | 3.63e-01 | 95.9% | 50.6% |
| 4037113 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 41.0 | 4.44e-01 | 100.0% | 95.2% |
| 4204421 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.54 | 39.0 | 4.25e-01 | 100.0% | 95.0% |
| 3311258 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.54 | 48.0 | 3.75e-01 | 100.0% | 79.4% |
| 4069291 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 38.0 | 4.15e-01 | 100.0% | 95.0% |
| 869287 | 1.1.9.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 | 0.52 | 43.0 | 4.42e-01 | 100.0% | 93.0% |
| 4165251 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.51 | 37.0 | 3.89e-01 | 100.0% | 89.2% |
| 3164943 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.51 | 38.0 | 4.08e-01 | 98.6% | 100.0% |
| 4299464 | 1.1.9.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C | 0.51 | 41.0 | 4.12e-01 | 100.0% | 86.7% |