←Back to structures

MH898687.1__AYP69227.1__Edno5_0054__00054

Bact-Vir

MH898687.1__AYP69227.1__Edno5_0054__00054

Identity

Accession:
MH898687 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gofduovirus› Edwardsiella_phage_Edno5

TaxID: 2419942

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-82
PDB
Domain cluster: rep: NC_028956.1__YP_009213817.1__AVV62_gp70__00059__D8-85
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05269.18 best Phage_CII 66.6 2.50e-18 100.0% 83.5%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xwrC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 63.0 6.50e-01 91.1% 98.7%
5i1uA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 44.0 2.96e-01 78.5% 17.7%
2imfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 44.0 3.29e-01 73.4% 64.0%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 44.0 4.27e-01 82.3% 69.0%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.60 41.0 3.28e-01 72.2% 68.4%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.58 36.0 3.29e-01 77.2% 44.5%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 40.0 4.09e-01 75.9% 88.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.77e-01 70.9% 80.0%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 42.0 4.30e-01 83.5% 97.4%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 40.0 4.02e-01 81.0% 91.5%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.95e-01 72.2% 97.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 4.03e-01 78.5% 100.0%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 36.0 3.69e-01 73.4% 92.2%
2de2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 38.0 2.86e-01 78.5% 60.3%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.57e-01 83.5% 81.9%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.72e-01 83.5% 92.2%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 35.0 3.72e-01 75.9% 100.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2786 101.1.4.6 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.96 66.0 6.70e-01 70.9% 71.8%
3976541 101.1.4.6 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.87 64.0 6.82e-01 77.2% 85.7%
4985252 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 42.0 4.54e-01 79.7% 78.5%
4984666 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 41.0 4.19e-01 77.2% 66.7%
3392449 2485.1.1.67 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT 0.62 45.0 3.45e-01 75.9% 56.7%
5031730 604.39.1.3 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.61 43.0 3.30e-01 73.4% 35.6%
5010215 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 35.0 3.93e-01 70.9% 75.0%
3718418 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 43.0 4.27e-01 75.9% 95.3%
5026568 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.60 42.0 3.25e-01 73.4% 35.4%
4583463 101.1.13.1 ↗ alpha arrays › HTH › HTH › Flagellar transcriptional activator FlhD › FlhD 0.59 48.0 5.09e-01 91.1% 100.0%
3444212 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 4.25e-01 77.2% 80.0%
1769338 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 33.0 3.51e-01 70.9% 70.0%
5028932 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 39.0 4.44e-01 87.3% 100.0%
4596043 1175.1.1.3 ↗ alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › CN_hydrolase 0.52 42.0 3.44e-01 96.2% 76.0%
5030878 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 39.0 4.30e-01 86.1% 96.9%
3282258 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 41.0 4.40e-01 93.7% 98.6%
4261392 7599.1.1.1 ↗ a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD 0.51 37.0 2.66e-01 77.2% 51.8%
3952144 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.50 38.0 4.18e-01 81.0% 96.9%