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MH920637.1__AYR01704.1__X__00001

Bact-Vir

MH920637.1__AYR01704.1__X__00001

Identity

Accession:
MH920637 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-B43

TaxID: 2484638

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 248-307
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 57.0 4.09e-01 98.3% 44.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 48.0 4.39e-01 95.0% 62.5%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.60 49.0 3.29e-01 93.3% 92.2%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.59 49.0 3.79e-01 100.0% 39.7%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 48.0 4.16e-01 93.3% 58.2%
1w5dA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 47.0 3.17e-01 93.3% 57.8%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.73e-01 100.0% 76.5%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.73e-01 90.0% 62.0%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.54 38.0 3.33e-01 90.0% 47.4%
6vv5A01 2.60.40.3130 Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) 0.54 37.0 2.97e-01 71.7% 47.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.49e-01 71.7% 62.3%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.54e-01 91.7% 59.3%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.53 45.0 3.84e-01 100.0% 81.7%
3n7lA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.21e-01 100.0% 64.9%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.46e-01 95.0% 90.4%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.23e-01 95.0% 80.4%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 31.0 3.55e-01 71.7% 97.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978676 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.64 53.0 4.90e-01 93.3% 70.0%
4957228 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.61 50.0 3.94e-01 100.0% 43.1%
3664869 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 41.0 2.79e-01 71.7% 32.7%
3575800 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 50.0 3.97e-01 98.3% 53.8%
5003221 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 50.0 4.14e-01 100.0% 55.7%
1286610 2004.1.1.478 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_21 0.58 48.0 3.78e-01 100.0% 77.6%
3778248 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.57 46.0 2.78e-01 98.3% 18.5%
3655399 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.47e-01 88.3% 92.0%
3604329 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 41.0 3.03e-01 95.0% 51.0%
3984464 274.1.1.12 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.50 40.0 2.98e-01 91.7% 35.7%
D2 high residues 313-426
PDB
Domain cluster: rep: MN018232.1__QDH50655.1__X__00189__D210-318
D3 medium residues 86-155
PDB
Domain cluster: rep: OP053362.1__UYE97273.1__X__00108__D357-406
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.66 40.0 3.08e-01 77.1% 27.2%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.66 56.0 3.86e-01 95.7% 56.6%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.62 45.0 3.88e-01 77.1% 66.1%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 43.0 3.50e-01 72.9% 83.7%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 44.0 2.85e-01 77.1% 93.3%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.59 46.0 4.03e-01 84.3% 75.0%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 45.0 3.75e-01 87.1% 98.5%
6xj6A01 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.56 39.0 2.95e-01 71.4% 76.9%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.56 42.0 4.16e-01 82.9% 85.3%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.21e-01 78.6% 56.7%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 42.0 3.17e-01 82.9% 44.3%
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 38.0 2.84e-01 72.9% 86.0%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 44.0 3.59e-01 88.6% 86.2%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 37.0 3.42e-01 74.3% 53.9%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.55 42.0 3.64e-01 84.3% 73.2%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 44.0 2.96e-01 98.6% 68.3%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.54 43.0 3.82e-01 87.1% 76.5%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 44.0 3.02e-01 95.7% 84.2%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 44.0 3.66e-01 100.0% 74.6%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 38.0 2.88e-01 80.0% 45.6%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.52 43.0 2.93e-01 97.1% 42.5%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 35.0 2.85e-01 71.4% 67.8%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.51 41.0 2.89e-01 88.6% 53.2%
1s7kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.22e-01 92.9% 96.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4477905 2484.1.1.75 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e 0.64 40.0 2.89e-01 71.4% 22.6%
6641 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.62 44.0 3.60e-01 74.3% 71.8%
3823490 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.59 43.0 3.23e-01 78.6% 47.0%
1421001 2484.1.1.75 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e 0.59 41.0 2.86e-01 72.9% 85.2%
4879580 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.58 38.0 2.93e-01 72.9% 30.1%
2630678 243.8.1.1 ↗ a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein › SAUGI 0.58 39.0 3.39e-01 87.1% 43.8%
4969245 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 45.0 3.63e-01 88.6% 90.3%
3292271 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.58 42.0 2.91e-01 78.6% 66.0%
3926057 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.57 46.0 3.08e-01 94.3% 67.2%
3708379 5.1.5.208 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.57 46.0 2.73e-01 98.6% 27.8%
3436989 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.56 43.0 3.08e-01 82.9% 52.9%
1137418 3797.1.1.1 ↗ beta meanders › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 › Uncharacterized protein PA5494 › DUF2782 0.56 42.0 4.16e-01 82.9% 85.3%
3443580 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.56 40.0 3.01e-01 78.6% 38.5%
3673993 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.56 42.0 2.91e-01 82.9% 31.6%
3578222 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 40.0 3.91e-01 78.6% 85.0%
4016769 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 44.0 3.30e-01 92.9% 77.3%
1442422 2484.1.1.69 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18_c,Ribosomal_L5e 0.55 38.0 2.57e-01 74.3% 75.8%
4944257 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.39e-01 87.1% 68.7%
4357660 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.96e-01 100.0% 54.7%
5012040 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.53 42.0 3.15e-01 91.4% 59.5%
3856372 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.53 39.0 2.87e-01 80.0% 47.9%
4991451 213.1.1.17 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 0.52 41.0 3.34e-01 87.1% 76.4%
4936581 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 37.0 3.50e-01 84.3% 63.5%
3712060 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 41.0 3.26e-01 94.3% 83.6%
3512953 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.51 40.0 2.64e-01 88.6% 55.9%
3592253 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 40.0 3.20e-01 91.4% 86.3%
3517153 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 30.0 2.95e-01 72.9% 51.2%
4018312 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.50 41.0 3.09e-01 98.6% 64.4%
3508172 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 42.0 2.68e-01 100.0% 43.8%