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MH920639.1__AYR01976.1__X__00195
Bact-VirMH920639.1__AYR01976.1__X__00195
Identity
- Accession:
- MH920639 ↗
- Kingdom:
- phage
Quality
89.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Leucotheavirus›
Synechococcus_phage_S-P4
TaxID: 2484640
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-73
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zqsA02 | 3.10.110.20 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like | 0.54 | 36.0 | 3.07e-01 | 87.7% | 40.8% |
| 3c9gA01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.51 | 30.0 | 2.43e-01 | 93.0% | 24.6% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.52e-01 | 87.7% | 59.8% |
| 1p9oA00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.50 | 40.0 | 2.68e-01 | 93.0% | 20.1% |
| 1e91A00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.50 | 38.0 | 3.38e-01 | 84.2% | 89.4% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.16e-01 | 80.7% | 48.0% |
| 7jpxA02 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.50 | 39.0 | 3.21e-01 | 91.2% | 75.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3405561 | 603.1.1.90 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Trehalose_recp | 0.64 | 54.0 | 3.32e-01 | 100.0% | 48.7% |
| 3298003 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.60 | 48.0 | 4.21e-01 | 94.7% | 98.9% |
| 3258453 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.59 | 40.0 | 3.42e-01 | 100.0% | 42.1% |
| 5015087 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 43.0 | 2.91e-01 | 100.0% | 90.6% |
| 4567738 | 192.29.1.50 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA | 0.51 | 45.0 | 3.06e-01 | 100.0% | 87.6% |
| 3916579 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.50 | 39.0 | 3.48e-01 | 86.0% | 62.4% |