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MH925092.1__QAY01971.1__VpaJT1_42__00041

Bact-Vir

MH925092.1__QAY01971.1__VpaJT1_42__00041

Identity

Accession:
MH925092 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VpaJT_1

TaxID: 2484247

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
Domain cluster: rep: NC_069153.1__YP_010582623.1__PF627_gp45__00045__D5-54
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04448.18 best DUF551 35.8 1.70e-08 100.0% 88.2%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.03e-01 88.6% 74.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 3.93e-01 88.6% 62.4%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 3.95e-01 88.6% 61.4%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 4.12e-01 88.6% 83.8%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.91e-01 87.1% 86.2%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.67e-01 88.6% 59.6%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 4.05e-01 88.6% 73.8%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 4.17e-01 97.1% 69.0%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 4.15e-01 88.6% 85.7%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.54e-01 88.6% 76.0%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.62e-01 88.6% 56.3%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.75e-01 88.6% 64.2%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.69e-01 88.6% 69.5%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.89e-01 87.1% 82.5%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.71e-01 87.1% 82.1%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.65e-01 88.6% 66.9%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.73e-01 88.6% 64.9%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.60e-01 87.1% 70.7%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.69e-01 87.1% 78.7%
4gniA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 33.0 3.61e-01 87.1% 78.9%
2lm3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 46.0 3.33e-01 100.0% 56.1%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 41.0 3.32e-01 88.6% 80.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.51e-01 84.3% 69.4%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.70e-01 88.6% 77.3%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.50e-01 88.6% 75.2%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.91e-01 98.6% 89.2%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 2.85e-01 75.7% 79.5%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.83e-01 98.6% 82.2%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.52e-01 88.6% 86.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 3.42e-01 87.1% 71.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3919311 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.66 54.0 4.45e-01 88.6% 72.0%
3487488 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.65 54.0 4.14e-01 88.6% 70.7%
3479370 220.1.1.94 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C 0.65 51.0 3.95e-01 87.1% 63.7%
3392311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 3.95e-01 88.6% 49.1%
3744542 220.1.1.89 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_4 0.64 51.0 3.76e-01 88.6% 75.3%
3255028 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 52.0 3.90e-01 88.6% 52.4%
3779372 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.63 51.0 3.80e-01 88.6% 77.8%
3875356 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.63 50.0 4.05e-01 88.6% 64.3%
3886947 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.62 49.0 3.82e-01 88.6% 74.4%
3697717 220.1.1.89 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_4 0.61 49.0 3.76e-01 88.6% 62.4%
3730266 220.1.1.89 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_4 0.61 48.0 3.64e-01 88.6% 68.5%
3778135 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 48.0 3.84e-01 88.6% 54.7%
3478828 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.61 48.0 3.67e-01 88.6% 68.8%
3785687 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.61 47.0 4.08e-01 87.1% 71.3%
3243986 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.60 48.0 4.23e-01 87.1% 81.0%
3995153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 4.16e-01 87.1% 79.0%
3885625 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 46.0 3.70e-01 88.6% 63.9%
4027577 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.91e-01 88.6% 75.2%
3497846 133.1.1.3 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › PH 0.59 46.0 2.93e-01 88.6% 20.5%
3479576 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 4.00e-01 88.6% 60.9%
3702466 220.1.1.80 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N 0.58 45.0 3.84e-01 87.1% 64.2%
3589333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 50.0 4.56e-01 100.0% 82.1%
3940063 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 4.10e-01 88.6% 83.2%
3597563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.69e-01 87.1% 66.4%
3399079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.84e-01 87.1% 65.5%
3789579 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.81e-01 88.6% 84.3%
3471368 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.86e-01 88.6% 81.8%
3788003 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.56 44.0 3.55e-01 88.6% 66.9%
3530034 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.74e-01 88.6% 63.3%
3921060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.48e-01 88.6% 64.7%
5013200 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.55 45.0 3.57e-01 88.6% 93.6%
3941316 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.55 43.0 3.65e-01 88.6% 82.4%
3578693 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.54 42.0 3.31e-01 87.1% 51.9%
3583844 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.54 43.0 3.37e-01 87.1% 72.0%
3214168 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.58e-01 88.6% 65.6%
3861007 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.54 43.0 3.44e-01 92.9% 83.7%
3861490 220.1.1.118 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.54 41.0 3.79e-01 88.6% 84.0%
3477358 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.54 43.0 3.31e-01 90.0% 60.6%
3170306 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.53 42.0 3.53e-01 91.4% 77.8%
3719720 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.53 44.0 2.72e-01 94.3% 29.6%
3627627 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 41.0 3.37e-01 88.6% 57.9%
3482289 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.47e-01 87.1% 88.0%
3742004 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.53 42.0 3.52e-01 88.6% 72.8%
3253113 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.52 40.0 3.54e-01 88.6% 70.4%
3496180 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.41e-01 88.6% 63.1%
3791995 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.52 40.0 3.21e-01 88.6% 59.4%
3266298 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 40.0 3.33e-01 88.6% 61.2%
3927945 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.44e-01 87.1% 66.1%
3873775 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 39.0 2.89e-01 88.6% 67.4%
3259128 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 38.0 3.29e-01 87.1% 62.4%