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MH925092.1__QAY02019.1__VpaJT1_91__00089

Bact-Vir

MH925092.1__QAY02019.1__VpaJT1_91__00089

Identity

Accession:
MH925092 ↗
Kingdom:
phage

Quality

96.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VpaJT_1

TaxID: 2484247

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-107
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 51.0 4.95e-01 100.0% 85.5%
4dooA02 1.10.890.20 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.60 41.0 4.12e-01 87.0% 72.2%
2w9mA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.58 41.0 3.90e-01 77.8% 97.1%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.55 40.0 4.02e-01 100.0% 76.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943356 101.1.4.19 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_35 0.75 57.0 5.16e-01 88.9% 60.0%
2845737 101.1.4.19 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_35 0.74 57.0 5.17e-01 90.7% 60.5%
3222360 103.1.1.21 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.65 47.0 4.98e-01 92.6% 93.3%
3590480 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.64 48.0 4.02e-01 90.7% 44.8%
4303963 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.61 50.0 4.48e-01 90.7% 90.7%
3497102 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 46.0 2.97e-01 94.4% 15.7%
4279016 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.55 42.0 3.78e-01 85.2% 71.2%
1320087 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.55 42.0 3.97e-01 90.7% 71.4%