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MH973725.1__AYJ73809.1__X__00020

Bact-Vir

MH973725.1__AYJ73809.1__X__00020

Identity

Accession:
MH973725 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bruynoghevirus› Pseudomonas_phage_SaPL

TaxID: 2364194

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.93 86.0 5.45e-01 100.0% 27.4%
7pbkA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 72.0 4.61e-01 100.0% 24.3%
2e6mA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 67.0 4.52e-01 100.0% 58.6%
1wviA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 47.0 3.52e-01 86.5% 38.6%
3uifA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 44.0 3.05e-01 100.0% 70.5%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.54 37.0 2.94e-01 75.0% 33.6%
6k6wC01 3.40.50.10710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Metallo-hydrolase/oxidoreductase 0.54 41.0 3.14e-01 92.3% 58.4%
4ykiA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 39.0 3.31e-01 86.5% 49.0%
3dnfA02 3.40.50.11270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 36.0 3.10e-01 80.8% 44.6%
2lkiA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 38.0 3.27e-01 78.8% 77.1%
1qguA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 42.0 3.32e-01 92.3% 42.1%
3btnA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.51 39.0 2.71e-01 90.4% 28.7%
1u2zA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.88e-01 92.3% 31.7%
2hy5C00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.51 39.0 3.31e-01 92.3% 71.3%
4qbaA00 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.50 36.0 2.52e-01 78.8% 23.5%
3lfjB00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.50 39.0 2.93e-01 96.2% 38.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080048 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.79 69.0 4.80e-01 100.0% 33.1%
4884514 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 70.0 4.80e-01 100.0% 39.3%
5068292 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.75 68.0 4.52e-01 100.0% 26.7%
5061528 2484.1.1.68 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.73 63.0 4.45e-01 100.0% 31.2%
3200515 5050.1.1.26 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot 0.59 44.0 3.15e-01 86.5% 65.7%
3168382 109.4.1.1135 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_RPO41_N 0.56 45.0 3.30e-01 100.0% 42.9%
3282593 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.55 45.0 3.03e-01 100.0% 50.4%
3394121 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 42.0 3.28e-01 84.6% 49.2%
3408206 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.54 42.0 3.15e-01 96.2% 47.5%
4961338 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.52 42.0 3.13e-01 100.0% 50.9%
3405582 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 38.0 3.09e-01 90.4% 39.1%
D2 medium residues 53-123
PDB
Domain cluster: rep: MG976803.1__AVP40153.1__PSH2311_056__00056__D44-111