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MH976515.1__AYR03236.1__SEA_OCTOBIEN14_92__00092

Bact-Vir

MH976515.1__AYR03236.1__SEA_OCTOBIEN14_92__00092

Identity

Accession:
MH976515 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Octobienvirus› Gordonia_phage_Octobien14

TaxID: 2483673

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-26_40-98
PDB
Domain cluster: rep: NC_053173.1__YP_010001210.1__JZX81_gp73__00073__D181-201_214-273
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 47.0 3.85e-01 71.6% 83.1%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 47.0 3.75e-01 71.6% 80.4%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 45.0 3.58e-01 72.8% 70.9%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.64 48.0 4.33e-01 77.8% 77.6%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 43.0 3.47e-01 70.4% 77.4%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 48.0 3.21e-01 90.1% 21.8%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.62 47.0 4.60e-01 92.6% 74.7%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 41.0 3.43e-01 70.4% 80.8%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 40.0 3.19e-01 70.4% 75.1%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.87e-01 87.7% 58.3%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 46.0 4.14e-01 86.4% 94.0%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 3.90e-01 91.4% 57.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.58 36.0 3.44e-01 75.3% 53.2%
1cf9A01 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.57 49.0 3.17e-01 95.1% 51.8%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 4.03e-01 93.8% 62.4%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 47.0 4.51e-01 95.1% 77.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.23e-01 75.3% 98.7%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.74e-01 85.2% 57.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.42e-01 76.5% 95.7%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.59e-01 91.4% 47.7%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 47.0 3.68e-01 96.3% 85.0%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.55 47.0 4.26e-01 95.1% 83.9%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 4.31e-01 96.3% 74.5%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.55 43.0 3.29e-01 90.1% 86.5%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.55 44.0 3.44e-01 91.4% 69.6%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.82e-01 93.8% 59.1%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 4.18e-01 95.1% 71.8%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.54 46.0 4.28e-01 93.8% 85.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 41.0 3.48e-01 82.7% 76.4%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.54 34.0 3.82e-01 79.0% 88.1%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 4.12e-01 93.8% 94.1%
1w7cA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.60e-01 81.5% 66.7%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.92e-01 97.5% 70.7%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 44.0 3.40e-01 91.4% 51.1%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 44.0 3.53e-01 93.8% 52.9%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.53 45.0 3.89e-01 95.1% 81.2%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.70e-01 90.1% 67.4%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 38.0 3.15e-01 76.5% 94.1%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.79e-01 92.6% 20.3%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.61e-01 91.4% 64.7%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.63e-01 93.8% 62.9%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.57e-01 98.8% 63.4%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.94e-01 100.0% 86.4%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.50 32.0 3.51e-01 72.8% 81.2%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 30.0 2.30e-01 81.5% 21.0%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.65e-01 93.8% 87.8%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993718 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.66 50.0 5.22e-01 95.1% 86.7%
3868838 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 44.0 3.57e-01 70.4% 74.4%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 42.0 4.44e-01 70.4% 75.7%
4085391 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 45.0 3.49e-01 72.8% 67.2%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 46.0 4.91e-01 87.7% 85.7%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.64 41.0 4.39e-01 70.4% 75.7%
4609098 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.60 53.0 4.40e-01 96.3% 81.5%
3965319 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 52.0 4.63e-01 96.3% 93.9%
2883156 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.59 43.0 3.84e-01 90.1% 52.0%
3386946 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.59 41.0 3.42e-01 71.6% 82.6%
4289288 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 52.0 4.47e-01 97.5% 84.4%
4117325 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 51.0 4.38e-01 97.5% 84.6%
5066760 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 52.0 4.45e-01 96.3% 90.3%
5077178 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.58 42.0 4.08e-01 90.1% 68.9%
3375447 274.1.1.46 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.58 49.0 4.51e-01 93.8% 96.2%
3243080 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.57 49.0 4.61e-01 95.1% 84.0%
3738775 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.57 47.0 4.01e-01 90.1% 89.6%
5004087 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 45.0 4.53e-01 87.7% 85.0%
4946877 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 46.0 2.99e-01 87.7% 31.5%
4640527 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 50.0 4.35e-01 98.8% 94.4%
4976982 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.56 48.0 4.36e-01 93.8% 99.1%
3274535 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 47.0 4.24e-01 92.6% 99.1%
3603237 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 4.44e-01 96.3% 74.3%
5058112 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.56 41.0 3.42e-01 79.0% 97.3%
5012515 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 47.0 4.35e-01 93.8% 89.5%
5003644 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.55 46.0 3.98e-01 91.4% 87.2%
4943092 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 42.0 3.61e-01 84.0% 52.6%
3966884 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.54 45.0 3.89e-01 92.6% 71.5%
3253090 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 44.0 4.04e-01 91.4% 71.8%
4318011 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 46.0 4.01e-01 93.8% 85.6%
5055120 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 46.0 4.09e-01 93.8% 86.1%
5064795 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.53 45.0 3.99e-01 95.1% 82.5%
2774000 881.4.1.1 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.53 44.0 4.15e-01 95.1% 88.3%
4179619 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 44.0 3.88e-01 100.0% 71.9%
4564251 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.52 44.0 3.91e-01 100.0% 74.6%
3936801 10.1.1.91 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29324 0.52 41.0 2.84e-01 85.2% 32.7%
3496857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 4.08e-01 96.3% 72.4%
3702545 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.52 44.0 2.79e-01 95.1% 19.5%
3826602 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.52 43.0 3.65e-01 93.8% 64.3%
4993408 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.52 46.0 3.68e-01 97.5% 65.0%
5039841 330.1.1.36 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF 0.51 43.0 3.96e-01 96.3% 71.8%
2724186 243.1.1.67 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.51 42.0 3.77e-01 93.8% 70.8%
3943581 881.4.1.1 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.51 45.0 4.06e-01 98.8% 81.8%