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MH976515.1__AYR03271.1__SEA_OCTOBIEN14_136__00130

Bact-Vir

MH976515.1__AYR03271.1__SEA_OCTOBIEN14_136__00130

Identity

Accession:
MH976515 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 55.0 6.07e-01 87.7% 91.5%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.29e-01 86.3% 76.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.81e-01 97.3% 93.5%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 5.15e-01 86.3% 75.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.68e-01 90.4% 93.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.32e-01 94.5% 77.5%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.61e-01 91.8% 96.8%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 58.0 4.63e-01 93.2% 90.1%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 59.0 5.17e-01 100.0% 93.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.50e-01 91.8% 95.2%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 4.89e-01 83.6% 81.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.80e-01 98.6% 97.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.37e-01 93.2% 92.4%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 52.0 4.12e-01 86.3% 96.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.21e-01 80.8% 93.5%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 4.11e-01 72.6% 66.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.64 48.0 5.12e-01 83.6% 93.7%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 51.0 5.00e-01 86.3% 91.1%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.63 54.0 4.24e-01 100.0% 62.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.81e-01 95.9% 72.8%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 38.0 3.90e-01 71.2% 63.0%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.60 49.0 4.07e-01 89.0% 92.3%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 38.0 4.02e-01 71.2% 71.2%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.39e-01 95.9% 27.8%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.59 50.0 4.64e-01 95.9% 89.5%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 45.0 2.93e-01 83.6% 24.5%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 38.0 3.52e-01 78.1% 52.7%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 4.00e-01 98.6% 78.5%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 47.0 3.75e-01 90.4% 94.7%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 43.0 3.69e-01 80.8% 79.8%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 40.0 4.12e-01 72.6% 81.7%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.57 44.0 3.96e-01 84.9% 76.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 48.0 3.82e-01 94.5% 87.2%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 43.0 4.06e-01 82.2% 96.6%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.65e-01 86.3% 66.4%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.71e-01 72.6% 74.4%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 2.99e-01 97.3% 36.7%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 38.0 4.15e-01 79.5% 89.8%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.14e-01 95.9% 31.4%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 45.0 3.20e-01 90.4% 48.5%
7vpjA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 42.0 3.14e-01 83.6% 63.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 4.11e-01 86.3% 88.5%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.54 42.0 4.43e-01 91.8% 98.4%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 46.0 4.30e-01 100.0% 97.9%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.53 37.0 3.81e-01 78.1% 78.6%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.88e-01 91.8% 28.0%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 45.0 4.21e-01 100.0% 91.7%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.79e-01 93.2% 20.9%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 43.0 2.63e-01 90.4% 27.5%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 38.0 4.05e-01 84.9% 90.6%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.77e-01 83.6% 37.7%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 44.0 3.51e-01 100.0% 89.8%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.70e-01 100.0% 60.3%
2yrrA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 3.95e-01 100.0% 75.7%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 42.0 3.82e-01 94.5% 83.7%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 39.0 3.47e-01 86.3% 92.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 56.0 6.30e-01 84.9% 96.4%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 61.0 6.47e-01 95.9% 95.4%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.58e-01 83.6% 80.0%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 54.0 5.82e-01 90.4% 91.7%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.74 58.0 5.56e-01 95.9% 72.9%
3781383 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 53.0 4.98e-01 93.2% 65.6%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.32e-01 87.7% 81.4%
3700454 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 4.92e-01 90.4% 95.7%
3563220 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.69 53.0 5.23e-01 94.5% 77.5%
3765502 4.1.1.50 beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.67 54.0 4.90e-01 87.7% 70.0%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.26e-01 93.2% 87.1%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.67 57.0 5.33e-01 93.2% 87.8%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.72e-01 94.5% 95.7%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.66 50.0 5.32e-01 87.7% 92.3%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 46.0 4.47e-01 72.6% 77.5%
3218656 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 52.0 3.29e-01 86.3% 26.1%
5061113 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.64 46.0 5.13e-01 84.9% 100.0%
4093354 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 47.0 4.84e-01 78.1% 92.9%
3572649 4.1.1.230 beta barrels › SH3 › SH3 › SH3 › DUF7030 0.64 50.0 4.90e-01 84.9% 100.0%
3650711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.27e-01 93.2% 90.7%
3999482 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.63 57.0 4.95e-01 100.0% 98.2%
4376886 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.63 54.0 5.27e-01 94.5% 93.8%
3939142 206.1.1.78 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.63 47.0 2.99e-01 82.2% 27.3%
3995759 4.1.1.284 beta barrels › SH3 › SH3 › SH3 › SBNO 0.61 47.0 4.07e-01 84.9% 51.7%
3624304 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 53.0 4.91e-01 97.3% 91.6%
3927214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.52e-01 100.0% 60.0%
3521181 4.1.1.229 beta barrels › SH3 › SH3 › SH3 0.61 47.0 3.54e-01 82.2% 37.7%
4030767 3504.1.1.1 beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 0.61 52.0 4.51e-01 100.0% 98.3%
4818765 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 43.0 4.67e-01 76.7% 98.3%
3506274 331.2.1.7 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung 0.60 52.0 4.43e-01 100.0% 78.4%
3701382 312.1.1.8 a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.59 47.0 3.17e-01 84.9% 96.5%
3520119 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.59 48.0 3.07e-01 91.8% 48.9%
3470371 3775.1.1.1 beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.58 49.0 3.09e-01 95.9% 84.6%
3269464 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 41.0 3.60e-01 75.3% 56.4%
3704939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.70e-01 72.6% 75.6%
3685393 5.1.4.317 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, Beta-prop_NOL10_N 0.57 46.0 2.86e-01 90.4% 21.1%
3275373 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.57 46.0 3.31e-01 90.4% 84.9%
3642858 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 45.0 3.05e-01 87.7% 25.4%
3227176 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 47.0 3.97e-01 94.5% 72.7%
3473191 3775.1.1.1 beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.56 46.0 2.96e-01 95.9% 86.2%
3934044 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.55 48.0 3.13e-01 100.0% 24.9%
3994731 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 44.0 3.34e-01 87.7% 39.4%
4009799 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.55 39.0 3.54e-01 87.7% 53.3%
4500383 316.1.1.26 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.55 38.0 2.94e-01 75.3% 74.1%
3346946 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.54 46.0 4.06e-01 98.6% 74.3%
3856441 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.54 39.0 3.37e-01 100.0% 47.5%
3285626 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.54 39.0 3.11e-01 89.0% 36.1%
3272228 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 3.02e-01 94.5% 26.7%
3454410 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 43.0 3.36e-01 89.0% 67.5%
3456785 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.53 42.0 3.23e-01 89.0% 37.2%
3519934 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.53 42.0 2.96e-01 89.0% 27.8%
3599870 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.52 44.0 3.56e-01 100.0% 94.4%
3967584 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.52 39.0 3.81e-01 82.2% 83.7%
3704413 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 37.0 2.42e-01 80.8% 21.7%
3684014 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.51 42.0 3.50e-01 91.8% 96.2%
3468128 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 37.0 2.45e-01 79.5% 98.8%
3841980 4205.1.1.0 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.50 42.0 3.17e-01 100.0% 87.1%