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MH992131.1__QAY18095.1__X__00002

Bact-Vir

MH992131.1__QAY18095.1__X__00002

Identity

Accession:
MH992131 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oshimavirus› Thermus_phage_TSP4

TaxID: 1298530

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 62.0 5.60e-01 98.7% 96.2%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 60.0 5.48e-01 97.4% 100.0%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 55.0 4.82e-01 98.7% 86.7%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 57.0 4.43e-01 100.0% 100.0%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 56.0 4.87e-01 100.0% 85.7%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 55.0 4.77e-01 100.0% 80.5%
3li9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 57.0 4.68e-01 100.0% 73.2%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 55.0 4.87e-01 100.0% 76.7%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 40.0 2.90e-01 75.0% 22.2%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 54.0 4.77e-01 100.0% 82.8%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 54.0 4.74e-01 98.7% 86.6%
3k3dA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 54.0 4.63e-01 98.7% 80.2%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 53.0 4.81e-01 100.0% 96.3%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 53.0 4.76e-01 100.0% 85.1%
4f3lB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 53.0 4.55e-01 100.0% 79.1%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 55.0 5.04e-01 100.0% 79.8%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 51.0 4.43e-01 98.7% 80.8%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 38.0 3.44e-01 93.4% 46.6%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 51.0 4.62e-01 100.0% 83.8%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 49.0 3.63e-01 98.7% 48.8%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 47.0 3.59e-01 94.7% 80.4%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 36.0 2.75e-01 71.1% 26.9%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.56 49.0 3.65e-01 100.0% 72.7%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 48.0 4.21e-01 100.0% 67.0%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.53e-01 100.0% 50.0%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 3.57e-01 90.8% 51.4%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 42.0 2.84e-01 86.8% 62.8%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.47e-01 84.2% 70.9%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.98e-01 100.0% 65.8%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.72e-01 100.0% 56.3%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.83e-01 100.0% 66.1%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 3.61e-01 98.7% 68.0%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.86e-01 94.7% 67.9%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 45.0 3.64e-01 100.0% 58.3%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 3.07e-01 77.6% 77.7%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.67e-01 100.0% 63.9%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.86e-01 93.4% 88.1%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.66e-01 100.0% 68.7%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 44.0 3.40e-01 100.0% 74.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 39.0 2.86e-01 100.0% 28.1%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.83e-01 98.7% 70.5%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 44.0 3.63e-01 100.0% 58.3%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.77e-01 100.0% 68.5%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.51 41.0 3.43e-01 94.7% 77.5%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.50 41.0 3.23e-01 94.7% 59.0%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.55e-01 100.0% 61.8%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.57e-01 100.0% 55.7%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 37.0 3.50e-01 94.7% 64.9%
3k0zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.37e-01 94.7% 56.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951355 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.73 65.0 4.44e-01 100.0% 36.8%
3973221 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.72 63.0 5.30e-01 98.7% 76.2%
4951490 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.69 61.0 5.56e-01 98.7% 96.0%
4980674 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.69 60.0 5.33e-01 97.4% 92.7%
3879380 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.68 60.0 4.93e-01 100.0% 70.3%
5008201 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 60.0 5.62e-01 98.7% 91.6%
3927984 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 60.0 5.21e-01 100.0% 79.2%
5019774 5001.1.1.293 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › MASE3 0.67 59.0 3.74e-01 100.0% 32.6%
4943942 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 42.0 3.76e-01 93.4% 46.7%
4011407 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 60.0 5.00e-01 100.0% 74.6%
4996769 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 58.0 5.01e-01 98.7% 80.8%
4020859 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 58.0 5.02e-01 98.7% 89.2%
4958946 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.66 58.0 4.97e-01 100.0% 82.4%
5006934 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.66 57.0 5.11e-01 98.7% 90.9%
4944871 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.66 56.0 4.92e-01 98.7% 81.7%
4946011 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 58.0 5.09e-01 100.0% 84.3%
4944528 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 57.0 4.76e-01 98.7% 78.5%
5008035 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 57.0 5.24e-01 98.7% 98.0%
4952183 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 56.0 5.12e-01 100.0% 100.0%
5063919 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.65 57.0 4.95e-01 98.7% 78.3%
4944433 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.65 57.0 4.99e-01 98.7% 83.5%
5051877 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.65 56.0 4.74e-01 98.7% 77.7%
5047585 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.64 55.0 4.85e-01 100.0% 81.7%
5005615 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.64 56.0 4.72e-01 98.7% 79.2%
1271814 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 57.0 4.71e-01 100.0% 70.1%
4980684 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 55.0 3.44e-01 98.7% 21.7%
4091463 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.64 55.0 4.88e-01 98.7% 84.3%
4999863 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 56.0 3.70e-01 100.0% 31.3%
4951689 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.64 55.0 4.95e-01 98.7% 88.2%
165648 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.64 54.0 4.95e-01 97.4% 92.2%
4943044 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.64 55.0 4.94e-01 100.0% 89.1%
None — 0.63 55.0 4.20e-01 98.7% 52.4%
4060191 223.1.1.85 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3+PAS_9 0.63 54.0 3.72e-01 100.0% 34.8%
5069528 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.62 55.0 4.92e-01 100.0% 88.2%
328257 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.62 53.0 4.89e-01 100.0% 92.3%
5049662 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.61 51.0 4.62e-01 100.0% 88.7%
3967995 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.60 54.0 3.37e-01 100.0% 22.2%
4880800 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 50.0 4.40e-01 98.7% 83.3%
4940586 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 38.0 3.29e-01 93.4% 40.8%
4370678 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.60 54.0 3.49e-01 100.0% 26.5%
5051192 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.60 48.0 2.94e-01 88.2% 86.1%
3173242 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 48.0 4.24e-01 97.4% 73.3%
4968485 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.57 43.0 2.87e-01 81.6% 21.3%
3596677 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 50.0 4.63e-01 97.4% 90.5%
4342296 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.56 46.0 3.81e-01 89.5% 53.3%
5012521 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 47.0 3.46e-01 100.0% 79.6%
3888744 3570.1.1.0 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily 0.55 42.0 3.71e-01 82.9% 92.2%
3234838 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.54 46.0 4.06e-01 100.0% 69.2%
3303563 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 46.0 3.71e-01 100.0% 56.2%
3820010 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 47.0 3.72e-01 100.0% 56.2%
1308671 222.1.1.20 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.53 39.0 3.20e-01 100.0% 44.3%
3509731 71.1.1.19 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.53 45.0 3.35e-01 100.0% 75.0%
3723691 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.52 39.0 2.48e-01 78.9% 32.2%
3818565 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 46.0 3.66e-01 100.0% 59.4%
4031907 222.1.1.28 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27762 0.52 43.0 3.76e-01 90.8% 61.8%
3781788 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.51 38.0 3.04e-01 80.3% 70.9%
2617498 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 42.0 3.89e-01 98.7% 71.6%
3905418 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 46.0 3.86e-01 100.0% 68.5%
3404941 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.51 47.0 3.54e-01 100.0% 46.5%
3736685 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 38.0 3.04e-01 82.9% 65.3%