←Back to structures

MH992131.1__QAY18099.1__X__00006

Bact-Vir

MH992131.1__QAY18099.1__X__00006

Identity

Accession:
MH992131 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oshimavirus› Thermus_phage_TSP4

TaxID: 1298530

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-93
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 68.0 5.37e-01 90.4% 55.3%
1w5sA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 68.0 5.36e-01 90.4% 55.3%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.78 45.0 3.22e-01 100.0% 21.1%
5yuyA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.70 48.0 3.63e-01 71.2% 51.6%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.82e-01 92.3% 61.6%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.68 52.0 4.69e-01 82.7% 83.1%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.68 48.0 4.56e-01 75.0% 80.6%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 4.43e-01 94.2% 62.9%
7x0fB01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.66 50.0 4.52e-01 84.6% 79.5%
2knaA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 40.0 3.98e-01 73.1% 57.4%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.64 49.0 3.37e-01 84.6% 91.4%
2n5hA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.64 47.0 4.05e-01 82.7% 72.2%
2c8mB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 55.0 3.53e-01 98.1% 41.6%
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.62 46.0 3.17e-01 78.8% 25.6%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.60 46.0 3.48e-01 86.5% 88.1%
1mkiA02 1.10.1500.10 Mainly Alpha › Orthogonal Bundle › Probable Glutaminase Ybgj; Chain: A, domain 2 › 0.59 50.0 3.77e-01 100.0% 77.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.58 46.0 3.98e-01 96.2% 86.2%
3d0kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 47.0 2.93e-01 88.5% 51.5%
2aajA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.58 50.0 3.77e-01 98.1% 74.4%
3ru0A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.56 39.0 2.87e-01 73.1% 61.5%
2lkiA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 40.0 3.66e-01 84.6% 79.5%
6scjA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 46.0 2.61e-01 90.4% 84.4%
1dxrL02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.55 46.0 3.72e-01 96.2% 59.3%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 41.0 4.00e-01 84.6% 78.3%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 41.0 3.73e-01 90.4% 66.3%
2ce7B03 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.54 47.0 3.34e-01 100.0% 70.8%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 43.0 3.49e-01 100.0% 66.4%
3fi9A02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.52 45.0 3.13e-01 100.0% 89.9%
4eeiA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.51 36.0 3.29e-01 78.8% 92.3%
2hoxA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 45.0 2.95e-01 100.0% 87.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3664835 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.82 71.0 5.34e-01 98.1% 48.8%
3341306 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.81 69.0 5.25e-01 98.1% 50.4%
5071094 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 66.0 5.69e-01 90.4% 68.8%
3369798 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.79 68.0 5.81e-01 98.1% 71.8%
3244128 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 5.23e-01 90.4% 63.2%
3617345 101.1.2.151 ↗ alpha arrays › HTH › HTH › winged helix domain › COR 0.78 64.0 5.13e-01 90.4% 60.0%
3646451 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.78 67.0 5.11e-01 98.1% 53.3%
4026717 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 61.0 5.49e-01 90.4% 62.9%
5072225 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.09e-01 90.4% 83.3%
3940471 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 66.0 5.56e-01 94.2% 72.9%
3589265 101.1.2.145 ↗ alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.77 64.0 5.38e-01 94.2% 96.7%
4029615 101.1.2.148 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.77 63.0 4.55e-01 90.4% 67.4%
3426912 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.75 62.0 5.55e-01 98.1% 76.2%
3450546 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 4.83e-01 96.2% 50.8%
3442072 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.74 62.0 4.78e-01 98.1% 48.0%
3421266 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 4.83e-01 98.1% 50.0%
3455132 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.74 61.0 4.79e-01 98.1% 50.0%
4263803 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.73 57.0 4.73e-01 84.6% 62.2%
4029825 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.73 61.0 5.27e-01 96.2% 86.9%
4970543 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.42e-01 96.2% 93.3%
4066538 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.72 59.0 5.05e-01 92.3% 63.5%
3327323 101.28.1.0 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.71 54.0 5.10e-01 84.6% 76.9%
4952766 604.39.1.2 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › BioY 0.70 57.0 3.89e-01 94.2% 43.1%
3434708 148.1.1.27 ↗ alpha arrays › Histone-like › Histone-related › Histone › NAM-associated 0.69 55.0 4.50e-01 90.4% 55.0%
3651198 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 54.0 5.39e-01 88.5% 90.9%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.69 54.0 5.21e-01 96.2% 75.0%
3730765 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.69 53.0 4.01e-01 86.5% 37.7%
4530535 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.69 55.0 3.44e-01 96.2% 15.2%
3233656 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 45.0 5.03e-01 80.8% 90.0%
5025444 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 59.0 4.19e-01 98.1% 86.3%
3545107 386.1.1.126 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 0.67 48.0 5.03e-01 84.6% 88.9%
5072114 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 58.0 4.11e-01 96.2% 42.7%
3659049 101.28.1.0 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.66 54.0 5.21e-01 94.2% 90.0%
3230421 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.66 43.0 3.83e-01 73.1% 46.7%
3961039 101.1.3.13 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.66 49.0 5.16e-01 84.6% 91.1%
5030252 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 56.0 4.54e-01 98.1% 61.0%
4229570 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.62 51.0 4.87e-01 98.1% 84.6%
3501407 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.61 51.0 4.05e-01 96.2% 84.3%
3793596 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.58 44.0 3.97e-01 84.6% 73.3%
4380838 109.4.1.45 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD 0.58 48.0 3.34e-01 88.5% 43.1%
3719467 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.93e-01 92.3% 64.7%
5033975 604.39.1.12 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › VTT_dom 0.55 43.0 3.12e-01 96.2% 30.0%
5059007 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.54 43.0 3.53e-01 98.1% 76.5%
3256902 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.54 45.0 3.83e-01 96.2% 87.5%
3936248 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 42.0 3.47e-01 100.0% 50.5%
5062736 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.50 44.0 3.37e-01 98.1% 91.7%