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AYM00287.1

Arc-Vir

MK002701__AYM00287.1__PhiH1-205__00041

Identity

Accession:: MK002701 ↗
Protein ID:: AYM00287.1 ↗
Kingdom:: archaea

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Myohalovirus› Halobacterium_phage_phiH

TaxID: 169684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-32

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x3mA00	1.25.40.670	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.81	64.0	4.10e-01	100.0%	18.7%
2klqA00	1.20.58.870	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.79	60.0	4.15e-01	100.0%	24.6%
1g5cA00	3.40.1050.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase	0.78	66.0	4.14e-01	100.0%	18.9%
2o8bB05	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.78	58.0	3.53e-01	100.0%	12.9%
1vq8P03	1.10.1200.60	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ›	0.72	56.0	4.94e-01	100.0%	58.2%
6dv2G02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.72	55.0	3.40e-01	100.0%	15.2%
3onqA01	1.20.5.5100	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.71	54.0	4.97e-01	90.6%	64.3%
1pv0A01	1.10.287.1100	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Sporulation inhibitor A	0.70	54.0	5.38e-01	93.8%	82.4%
3u62A01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.70	56.0	3.84e-01	100.0%	24.8%
5o6uB00	3.30.70.2540	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4	0.69	49.0	3.24e-01	93.8%	17.0%
6y04A01	3.40.1050.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase	0.68	53.0	3.40e-01	96.9%	18.6%
3gffA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.66	54.0	3.13e-01	93.8%	9.5%
3dkqA02	4.10.860.20	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain	0.65	52.0	4.77e-01	96.9%	66.0%
4n1aB01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.65	54.0	3.13e-01	100.0%	24.7%
4c23B02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.64	54.0	3.25e-01	100.0%	17.9%
4izzB02	1.10.10.1680	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain	0.64	50.0	4.07e-01	93.8%	55.9%
1kblA02	1.10.189.10	Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2	0.63	46.0	3.93e-01	100.0%	46.0%
1kf6D00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.62	49.0	3.50e-01	100.0%	26.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3607406	6026.1.1.0 ↗	alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain	0.82	67.0	5.15e-01	100.0%	42.5%
4933312	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.82	68.0	4.46e-01	100.0%	24.3%
5040510	304.48.1.3 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B	0.61	52.0	3.11e-01	100.0%	60.8%