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AYM00308.1
Arc-VirMK002701__AYM00308.1__PhiH1-310__00062
Identity
- Accession:
- MK002701 ↗
- Protein ID:
- AYM00308.1 ↗
- Kingdom:
- archaea
Quality
83.1
mean pLDDT
Taxonomy
TaxID: 169684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cofA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.67 | 52.0 | 3.63e-01 | 89.4% | 87.8% |
| 2jhjA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.66 | 44.0 | 3.35e-01 | 95.7% | 27.5% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 44.0 | 4.66e-01 | 72.3% | 80.5% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.65 | 50.0 | 3.74e-01 | 87.2% | 63.3% |
| 3g9kD02 | 1.10.246.230 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.64 | 44.0 | 3.73e-01 | 74.5% | 42.5% |
| 3h7iA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.64 | 43.0 | 3.76e-01 | 72.3% | 93.5% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.59 | 41.0 | 3.69e-01 | 72.3% | 89.1% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.59 | 39.0 | 2.69e-01 | 72.3% | 18.8% |
| 3w7tA04 | 3.30.1390.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30p/L7e | 0.58 | 36.0 | 3.81e-01 | 78.7% | 84.4% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 46.0 | 3.43e-01 | 95.7% | 81.5% |
| 3mteA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 40.0 | 2.72e-01 | 83.0% | 35.6% |
| 1t3uA01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.54 | 37.0 | 3.85e-01 | 78.7% | 79.1% |
| 4ottA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.54 | 45.0 | 3.39e-01 | 100.0% | 38.0% |
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.54 | 41.0 | 3.16e-01 | 85.1% | 47.7% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.53 | 41.0 | 2.89e-01 | 87.2% | 42.1% |
| 7og5F01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.52 | 41.0 | 2.96e-01 | 91.5% | 97.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3725585 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.74 | 43.0 | 2.83e-01 | 72.3% | 15.5% |
| 1688953 | 6154.1.1.1 ↗ | a+b complex topology › C-terminal domain of Ebola nucleoprotein › C-terminal domain of Ebola nucleoprotein › C-terminal domain of Ebola nucleoprotein › Ebola_NP | 0.60 | 46.0 | 3.64e-01 | 85.1% | 71.8% |
| 3546841 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.60 | 44.0 | 4.73e-01 | 100.0% | 92.5% |
| 3278769 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 3.38e-01 | 100.0% | 40.0% |
| 3285436 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.58 | 45.0 | 4.38e-01 | 100.0% | 78.3% |
| 3544617 | 1008.1.1.0 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain | 0.56 | 49.0 | 4.34e-01 | 100.0% | 95.7% |
| 3958995 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.54 | 43.0 | 4.04e-01 | 97.9% | 82.8% |
| 3338152 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 45.0 | 3.95e-01 | 93.6% | 77.1% |
| 4026650 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.52 | 44.0 | 2.97e-01 | 100.0% | 58.0% |
| 3608431 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 37.0 | 2.54e-01 | 80.9% | 35.1% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.50 | 40.0 | 3.44e-01 | 85.1% | 71.4% |