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MK005300.1__AYN56107.1__STG2_143__00143

Bact-Vir

MK005300.1__AYN56107.1__STG2_143__00143

Identity

Accession:
MK005300 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Salmonella_phage_STG2

TaxID: 2480623

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: rep: NC_018843.1__YP_006906700.1__SSU5_068__00068__D5-68
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.72 50.0 4.34e-01 71.6% 57.1%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.72 53.0 3.00e-01 77.6% 12.5%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.70 49.0 4.23e-01 73.1% 89.2%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.68 48.0 3.52e-01 73.1% 35.8%
3gekA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 50.0 4.02e-01 79.1% 91.6%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.67 48.0 3.98e-01 76.1% 51.2%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.65 45.0 4.04e-01 71.6% 60.0%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.65 43.0 4.35e-01 73.1% 67.6%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.64 48.0 3.21e-01 79.1% 46.9%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 47.0 3.48e-01 79.1% 33.7%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 48.0 3.53e-01 80.6% 32.0%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.64 50.0 3.33e-01 85.1% 41.6%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 46.0 3.44e-01 80.6% 31.5%
3mq0B02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 46.0 3.47e-01 80.6% 33.7%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 3.60e-01 73.1% 96.7%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 49.0 3.26e-01 95.5% 31.0%
3p1vA01 2.60.40.3250 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain 0.60 51.0 4.03e-01 94.0% 94.2%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 45.0 3.80e-01 85.1% 97.5%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.59 45.0 3.64e-01 83.6% 67.4%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.38e-01 98.5% 99.1%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.26e-01 100.0% 93.5%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 45.0 3.64e-01 89.6% 74.5%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.58 49.0 4.65e-01 100.0% 78.8%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 52.0 3.21e-01 100.0% 90.6%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 42.0 3.42e-01 86.6% 52.0%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.56 38.0 3.58e-01 70.1% 74.1%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.56 43.0 2.56e-01 88.1% 20.0%
2z1aA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 45.0 2.94e-01 94.0% 69.2%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 47.0 4.17e-01 100.0% 73.5%
1yo8A02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.54 35.0 3.71e-01 91.0% 80.4%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 3.99e-01 86.6% 75.7%
1nrfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 44.0 3.12e-01 100.0% 60.6%
6ihjC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.05e-01 85.1% 94.6%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.51 34.0 3.35e-01 70.1% 61.0%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.85e-01 94.0% 84.4%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.05e-01 79.1% 89.2%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.73e-01 94.0% 88.0%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.64e-01 91.0% 80.6%
1nepA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.24e-01 88.1% 70.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082348 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.71 48.0 3.70e-01 70.1% 39.3%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.71 52.0 4.40e-01 77.6% 95.5%
4948119 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.70 59.0 4.85e-01 92.5% 98.3%
None — 0.70 58.0 3.48e-01 89.6% 67.7%
4927548 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.70 47.0 3.85e-01 70.1% 56.7%
6844 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.68 48.0 3.52e-01 73.1% 35.8%
3782183 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 61.0 3.63e-01 98.5% 49.9%
4988348 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.68 46.0 2.95e-01 70.1% 21.3%
4989233 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.67 45.0 3.58e-01 70.1% 47.1%
3288346 223.1.1.37 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N 0.67 46.0 4.01e-01 70.1% 50.5%
4325844 5085.1.1.2 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.66 51.0 3.12e-01 83.6% 59.3%
3277836 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.66 48.0 3.61e-01 79.1% 31.4%
4011730 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.65 50.0 3.57e-01 83.6% 34.6%
4030599 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.65 47.0 3.65e-01 76.1% 49.0%
3917583 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.64 56.0 3.44e-01 100.0% 92.7%
4930317 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.64 43.0 3.37e-01 70.1% 42.1%
1853949 243.1.1.35 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ORF_12_N 0.63 50.0 4.26e-01 85.1% 99.1%
3890539 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 45.0 4.74e-01 77.6% 98.3%
3789483 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.62 48.0 3.46e-01 83.6% 82.6%
5041069 223.1.1.122 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA 0.61 41.0 2.87e-01 70.1% 28.3%
409645 809.1.1.1 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.61 50.0 4.46e-01 91.0% 99.0%
3243860 331.15.1.4 ↗ a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › FTH 0.61 41.0 3.22e-01 71.6% 34.8%
4352445 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.60 53.0 3.28e-01 100.0% 83.1%
3215377 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.60 51.0 3.19e-01 94.0% 91.8%
3395041 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.60 53.0 3.31e-01 100.0% 89.4%
3853362 243.3.1.2 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cathelicidins 0.60 43.0 3.63e-01 76.1% 68.7%
3691084 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 46.0 3.26e-01 85.1% 31.9%
3251548 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 50.0 3.46e-01 94.0% 89.6%
3970434 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 40.0 3.16e-01 70.1% 44.1%
3280381 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 40.0 3.17e-01 71.6% 95.8%
3731275 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 49.0 3.55e-01 95.5% 37.0%
3688227 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.58 49.0 3.55e-01 95.5% 37.0%
4998774 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 51.0 3.08e-01 98.5% 27.3%
3287259 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.58 44.0 2.86e-01 85.1% 37.3%
3815584 11.1.1.89 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1223 0.58 40.0 3.33e-01 74.6% 86.2%
3947165 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 46.0 3.58e-01 88.1% 44.0%
3583345 5.1.4.288 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.57 44.0 2.77e-01 89.6% 23.9%
5012323 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 48.0 3.04e-01 100.0% 59.7%
3609610 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.56 44.0 2.96e-01 89.6% 77.3%
3199758 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.56 49.0 3.06e-01 100.0% 90.2%
3686189 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.55 43.0 3.16e-01 88.1% 35.0%
3479080 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 45.0 4.18e-01 100.0% 78.4%
3886721 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.45e-01 79.1% 90.0%
3217504 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.51 42.0 3.76e-01 98.5% 90.5%