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MK016491.1__AYQ99119.1__PBI_BABOJAY_139__00137

Bact-Vir

MK016491.1__AYQ99119.1__PBI_BABOJAY_139__00137

Identity

Accession:
MK016491 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kostyavirus› Mycobacterium_phage_BaboJay

TaxID: 2484208

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-67
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.66 47.0 3.96e-01 76.3% 48.5%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 46.0 3.24e-01 76.3% 68.4%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 45.0 3.40e-01 76.3% 33.1%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 45.0 3.22e-01 76.3% 71.0%
5wkfD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.46e-01 100.0% 69.4%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 3.24e-01 74.6% 37.8%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 3.28e-01 74.6% 38.4%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 44.0 3.47e-01 76.3% 39.8%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 52.0 3.97e-01 98.3% 76.2%
5e44A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 43.0 3.25e-01 76.3% 31.5%
3mq0B02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 43.0 3.10e-01 76.3% 70.9%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 44.0 3.38e-01 79.7% 39.9%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.38e-01 78.0% 40.6%
3e8vA00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.60 46.0 4.21e-01 100.0% 62.2%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 43.0 3.04e-01 76.3% 70.5%
3iwzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 42.0 3.29e-01 76.3% 35.8%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.20e-01 100.0% 68.5%
4ev0D01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 42.0 3.26e-01 76.3% 34.3%
2frgP00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 52.0 4.30e-01 100.0% 65.1%
5hpfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 42.0 3.03e-01 76.3% 73.7%
2o0yB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 42.0 3.03e-01 76.3% 66.7%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 42.0 3.35e-01 76.3% 37.1%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 42.0 3.02e-01 76.3% 72.7%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 42.0 3.32e-01 76.3% 38.5%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 42.0 2.99e-01 76.3% 70.7%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 42.0 3.02e-01 76.3% 70.2%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.58 40.0 3.23e-01 76.3% 36.4%
2z69B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 3.13e-01 76.3% 32.0%
2pqqA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 3.08e-01 76.3% 32.0%
6p58A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 41.0 3.11e-01 78.0% 66.7%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 41.0 3.01e-01 76.3% 72.2%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 41.0 2.93e-01 76.3% 70.8%
2qqkA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 39.0 3.18e-01 76.3% 36.8%
2n99A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 45.0 4.23e-01 94.9% 69.7%
3g7mA00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.56 45.0 3.58e-01 100.0% 50.3%
2h5fB00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 45.0 4.23e-01 89.8% 94.6%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.97e-01 100.0% 68.3%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.76e-01 100.0% 65.9%
3kfwX02 3.30.70.2650 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.80e-01 83.1% 84.1%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.98e-01 100.0% 72.0%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.55 41.0 3.30e-01 93.2% 39.3%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.55 46.0 3.57e-01 100.0% 55.7%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.81e-01 100.0% 63.6%
1bteA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 46.0 4.08e-01 100.0% 93.5%
4nofB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.86e-01 100.0% 68.9%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.08e-01 78.0% 37.2%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.54 46.0 3.29e-01 100.0% 48.7%
2yjlA00 2.60.40.2990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.71e-01 100.0% 61.1%
3shrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 37.0 2.91e-01 76.3% 35.0%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.73e-01 100.0% 58.8%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 2.89e-01 81.4% 52.2%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.52 35.0 3.01e-01 100.0% 41.2%
2l03A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 42.0 3.93e-01 89.8% 98.6%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 43.0 3.42e-01 100.0% 68.4%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.51 41.0 3.46e-01 94.9% 77.5%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.30e-01 94.9% 93.8%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.70e-01 100.0% 71.7%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.58e-01 100.0% 61.7%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 2.91e-01 78.0% 37.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890782 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.63 46.0 3.51e-01 78.0% 37.2%
4455326 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 44.0 3.87e-01 74.6% 50.0%
3597119 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 54.0 3.75e-01 100.0% 60.5%
3621262 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 49.0 4.90e-01 89.8% 86.7%
3894462 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.61 44.0 3.30e-01 78.0% 35.6%
3888374 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 3.99e-01 100.0% 62.8%
3386725 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.61 44.0 3.43e-01 76.3% 37.6%
3242376 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 43.0 3.39e-01 76.3% 43.1%
3164922 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.61 43.0 3.45e-01 76.3% 39.2%
3699997 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 52.0 3.69e-01 100.0% 57.8%
3290876 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.60 43.0 3.07e-01 76.3% 72.9%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 51.0 4.04e-01 100.0% 73.1%
3222377 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 41.0 3.05e-01 76.3% 26.9%
3519566 10.32.1.230 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_N 0.59 42.0 3.30e-01 76.3% 54.8%
3243572 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 43.0 3.21e-01 78.0% 35.2%
3700401 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 51.0 3.64e-01 100.0% 58.9%
3517479 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 43.0 3.60e-01 78.0% 46.0%
3710740 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 50.0 3.58e-01 100.0% 56.3%
4947842 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.58 48.0 3.57e-01 98.3% 64.6%
3509173 382.1.1.3 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.58 49.0 4.31e-01 100.0% 67.4%
4337080 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 3.75e-01 100.0% 72.1%
3571964 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.57 47.0 4.17e-01 98.3% 64.5%
3590535 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 40.0 3.14e-01 76.3% 36.3%
3874667 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 4.01e-01 100.0% 68.6%
3636521 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 49.0 3.71e-01 98.3% 56.4%
3238387 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.56 48.0 3.96e-01 98.3% 57.4%
3242918 7056.1.1.0 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.55 39.0 4.23e-01 76.3% 100.0%
3714531 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 48.0 3.11e-01 100.0% 41.5%
4971125 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.31e-01 78.0% 64.5%
4941023 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 43.0 3.88e-01 100.0% 61.2%
3583263 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 44.0 3.61e-01 100.0% 45.8%
3216116 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 44.0 4.21e-01 93.2% 95.7%
1281 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 39.0 3.08e-01 78.0% 37.2%
5000329 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.67e-01 93.2% 74.3%
3514167 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.56e-01 100.0% 45.2%
4958415 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.54 44.0 3.77e-01 100.0% 62.7%
1300220 12.1.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Collagen_bind_2 0.54 42.0 3.60e-01 96.6% 54.3%
3905963 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.74e-01 100.0% 64.5%
3482386 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.53 37.0 2.87e-01 79.7% 65.3%
4440530 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 43.0 3.27e-01 91.5% 57.2%
4642326 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 44.0 4.00e-01 98.3% 100.0%
3925945 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 41.0 3.75e-01 94.9% 76.7%
3408652 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.24e-01 100.0% 46.9%
3650246 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 38.0 3.01e-01 84.7% 68.3%
3601923 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 3.06e-01 98.3% 81.6%
4994977 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 38.0 3.14e-01 89.8% 38.8%
4941474 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.70e-01 100.0% 75.8%
4327600 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.50 41.0 3.74e-01 96.6% 88.2%