←Back to structures

MK016493.1__AYQ99239.1__PBI_CANTARE_18__00018

Bact-Vir

MK016493.1__AYQ99239.1__PBI_CANTARE_18__00018

Identity

Accession:
MK016493 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cantarevirus› Brevibacterium_phage_Cantare

TaxID: 2338395

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-179
PDB
Domain cluster: rep: MT764210__UXF49854.1__7841G1D8-26__00026__D257-398
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.80 58.0 6.68e-01 96.6% 100.0%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.80 57.0 6.59e-01 98.9% 100.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.76 56.0 6.34e-01 100.0% 99.3%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.73 55.0 6.13e-01 99.4% 97.9%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.72 34.0 4.51e-01 80.2% 81.2%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 23.0 3.21e-01 94.4% 54.9%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.70 42.0 5.05e-01 100.0% 92.0%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.65 26.0 3.77e-01 97.2% 79.0%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.65 34.0 4.41e-01 89.8% 90.6%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.65 28.0 3.12e-01 93.8% 49.3%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 33.0 4.17e-01 85.9% 82.2%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 36.0 4.43e-01 85.9% 86.8%
3w1eA02 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.63 41.0 4.20e-01 98.3% 66.7%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 33.0 4.01e-01 84.2% 78.4%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 22.0 2.70e-01 94.4% 47.7%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.60 32.0 3.90e-01 84.2% 77.4%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 33.0 4.07e-01 85.3% 86.1%
1ivzA00 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.60 38.0 4.23e-01 88.1% 82.6%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 35.0 4.18e-01 91.5% 87.0%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 4.11e-01 86.4% 86.8%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 25.0 3.30e-01 81.9% 72.2%
4bhqA00 3.30.70.2830 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 34.0 4.25e-01 97.7% 97.2%
4pxeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 34.0 4.01e-01 86.4% 87.2%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 35.0 3.81e-01 92.7% 75.7%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 29.0 3.27e-01 75.7% 65.4%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 30.0 3.60e-01 79.1% 83.0%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 49.0 4.07e-01 98.9% 94.4%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 48.0 4.14e-01 98.3% 87.2%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 30.0 2.98e-01 97.7% 48.7%
3dwoX00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.53 41.0 3.09e-01 80.8% 89.2%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 28.0 3.57e-01 79.1% 89.9%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 47.0 3.92e-01 98.9% 89.8%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.52 36.0 3.74e-01 97.7% 73.1%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 40.0 3.00e-01 79.1% 84.2%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.78e-01 70.1% 100.0%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.52 43.0 3.47e-01 90.4% 46.9%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 29.0 3.35e-01 97.2% 76.0%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.85e-01 78.0% 99.0%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 33.0 3.76e-01 95.5% 87.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928893 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.80 64.0 7.04e-01 98.9% 100.0%
3970985 304.124.1.9 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.77 59.0 6.65e-01 99.4% 100.0%
364035 304.124.1.1 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.77 56.0 6.40e-01 99.4% 100.0%
5454 304.124.1.2 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.75 55.0 6.29e-01 95.5% 99.3%
3589225 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.75 56.0 6.36e-01 99.4% 100.0%
4562028 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.69 43.0 4.76e-01 98.9% 76.6%
4079091 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.68 32.0 4.08e-01 77.4% 76.0%
3967083 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 28.0 3.80e-01 100.0% 72.6%
3302845 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 35.0 4.07e-01 79.1% 70.0%
1005533 7503.1.1.9 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › FlgT_M 0.63 41.0 4.25e-01 98.3% 68.6%
3336425 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 35.0 3.91e-01 81.4% 70.4%
5052852 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.62 45.0 4.52e-01 98.9% 72.8%
3333639 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.61 33.0 3.66e-01 81.4% 63.4%
3441397 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.60 33.0 3.60e-01 81.4% 62.0%
3773175 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.60 45.0 4.48e-01 77.4% 94.6%
3581757 11.12.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.60 41.0 3.81e-01 90.4% 53.8%
4018556 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.60 28.0 2.94e-01 91.5% 46.9%
3431197 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.58 33.0 3.45e-01 80.8% 56.5%
150358 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.57 40.0 3.77e-01 84.7% 58.5%
3963954 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.56 29.0 3.22e-01 90.4% 60.0%
3977398 5084.1.1.16 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom 0.53 36.0 3.86e-01 98.9% 76.9%
4136159 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.53 37.0 3.77e-01 97.7% 72.0%
3764436 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.53 46.0 4.69e-01 100.0% 96.6%
3474773 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.52 37.0 4.25e-01 81.4% 98.5%
3699878 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.52 35.0 4.16e-01 79.7% 97.6%
3478219 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.52 37.0 4.22e-01 82.5% 96.3%
3484305 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.52 21.0 3.32e-01 79.7% 100.0%
3918163 304.20.1.1 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.52 36.0 3.96e-01 88.7% 87.9%
3708605 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.51 34.0 3.92e-01 71.2% 93.6%
3598105 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 34.0 4.06e-01 78.5% 100.0%
3270041 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.51 29.0 3.68e-01 82.5% 93.3%
3621533 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.50 46.0 4.27e-01 98.9% 79.5%
3707804 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.50 35.0 3.69e-01 81.9% 78.1%