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MK016493.1__AYQ99248.1__PBI_CANTARE_28__00028

Bact-Vir

MK016493.1__AYQ99248.1__PBI_CANTARE_28__00028

Identity

Accession:
MK016493 ↗
Kingdom:
phage

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.75 50.0 4.28e-01 83.9% 42.7%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.70 51.0 3.15e-01 92.9% 13.9%
4eqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 49.0 4.21e-01 92.9% 46.1%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.27e-01 96.4% 76.2%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 4.69e-01 98.2% 52.1%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 44.0 4.39e-01 98.2% 64.4%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 45.0 3.81e-01 83.9% 41.7%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.66 47.0 3.02e-01 92.9% 14.3%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 52.0 3.75e-01 94.6% 31.4%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 3.94e-01 89.3% 44.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.65 52.0 5.22e-01 89.3% 91.1%
3lltA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 47.0 4.05e-01 96.4% 47.3%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 53.0 4.22e-01 94.6% 43.8%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 46.0 3.61e-01 96.4% 36.3%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 50.0 3.15e-01 92.9% 34.6%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.62 42.0 3.95e-01 96.4% 56.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.67e-01 94.6% 69.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 48.0 4.67e-01 89.3% 82.3%
1p38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 47.0 3.53e-01 94.6% 34.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 52.0 3.14e-01 100.0% 34.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.73e-01 96.4% 85.5%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 3.27e-01 100.0% 58.1%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 46.0 3.58e-01 94.6% 37.6%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 3.43e-01 100.0% 44.1%
3c5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.82e-01 91.1% 14.9%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 37.0 3.71e-01 78.6% 63.9%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.56e-01 91.1% 83.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 3.88e-01 94.6% 55.2%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 48.0 3.07e-01 100.0% 23.0%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.55 46.0 4.08e-01 96.4% 84.9%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 2.81e-01 98.2% 33.6%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.72e-01 100.0% 73.8%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 43.0 2.77e-01 91.1% 30.5%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 44.0 3.45e-01 87.5% 90.7%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 47.0 3.04e-01 100.0% 23.3%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.05e-01 100.0% 64.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.58e-01 78.6% 78.3%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.67e-01 100.0% 66.7%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 43.0 2.58e-01 96.4% 22.0%
1uyjA01 3.30.360.60 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.51 44.0 3.92e-01 98.2% 72.0%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.51 43.0 3.57e-01 100.0% 72.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041149 4.26.1.9 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › CPxCG_zf 0.75 54.0 5.84e-01 82.1% 95.6%
4968081 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.73 59.0 5.95e-01 89.3% 90.9%
4983425 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.73 49.0 2.86e-01 100.0% 8.3%
5061113 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.72 59.0 6.01e-01 91.1% 92.7%
5062756 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 58.0 6.08e-01 89.3% 100.0%
3657336 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.71 46.0 2.89e-01 87.5% 12.3%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 4.56e-01 94.6% 43.3%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 4.19e-01 89.3% 44.0%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.42e-01 82.1% 97.8%
3798312 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 56.0 5.30e-01 92.9% 78.6%
3790784 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 51.0 3.33e-01 94.6% 17.4%
3940730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 58.0 4.91e-01 96.4% 62.1%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 49.0 2.87e-01 94.6% 8.7%
4587696 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.68 49.0 4.11e-01 100.0% 44.0%
3939715 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 50.0 3.14e-01 94.6% 14.4%
3509036 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 4.54e-01 100.0% 49.6%
2760811 4.8.1.7 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.67 52.0 5.03e-01 89.3% 75.8%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.66 56.0 4.56e-01 94.6% 51.4%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.37e-01 94.6% 83.1%
3575262 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.66 49.0 3.04e-01 94.6% 13.3%
3593574 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 52.0 3.11e-01 94.6% 13.2%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 54.0 4.63e-01 94.6% 65.3%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 53.0 4.59e-01 92.9% 67.8%
4076295 375.1.1.88 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.65 47.0 4.80e-01 83.9% 80.0%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.65 53.0 4.88e-01 92.9% 88.0%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.64 51.0 5.17e-01 96.4% 92.7%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.64 55.0 4.83e-01 98.2% 72.9%
5000913 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 56.0 3.23e-01 100.0% 20.6%
4673289 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.63 55.0 3.92e-01 100.0% 60.0%
3642524 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.63 40.0 3.12e-01 82.1% 28.0%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.63 51.0 4.38e-01 92.9% 76.8%
3201592 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 41.0 2.74e-01 94.6% 16.8%
3714515 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.62 49.0 2.96e-01 94.6% 12.6%
4379563 375.1.1.289 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.62 43.0 4.62e-01 83.9% 91.1%
5016920 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 44.0 4.07e-01 100.0% 56.4%
4945078 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 53.0 3.93e-01 100.0% 69.7%
3998942 220.1.1.162 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.62 51.0 4.06e-01 100.0% 78.5%
3925471 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 40.0 4.00e-01 78.6% 63.3%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.60 49.0 4.13e-01 96.4% 54.3%
4970357 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.60 52.0 2.96e-01 100.0% 17.3%
3490945 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.60 50.0 4.95e-01 92.9% 98.3%
3520811 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.60 42.0 3.95e-01 76.8% 60.0%
4960621 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 41.0 2.41e-01 89.3% 8.2%
3399942 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.59 49.0 3.90e-01 94.6% 59.2%
3974565 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.58 44.0 4.21e-01 91.1% 70.8%
3388887 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.58 41.0 3.98e-01 76.8% 66.2%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.58 48.0 4.19e-01 100.0% 64.2%
3249318 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.58 49.0 3.13e-01 100.0% 43.3%
3323474 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 47.0 4.13e-01 96.4% 70.0%
3955707 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 37.0 3.26e-01 98.2% 43.5%
4881914 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.56 47.0 3.33e-01 100.0% 78.6%
3173920 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 47.0 2.94e-01 100.0% 27.1%
4491369 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.55 46.0 2.97e-01 100.0% 42.6%
4991059 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.49e-01 82.1% 98.0%
4998413 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 4.09e-01 100.0% 75.7%
3660366 2003.1.2.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.54 46.0 2.94e-01 100.0% 54.3%
3389948 4.8.1.29 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SH3_AEBP2_C 0.54 39.0 3.29e-01 83.9% 44.0%
4029844 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.54 46.0 4.07e-01 100.0% 75.3%
2897753 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.54 45.0 4.18e-01 100.0% 87.0%
3583473 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 46.0 2.90e-01 100.0% 21.3%
3940847 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 46.0 3.76e-01 100.0% 52.7%
3491951 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.53 42.0 2.58e-01 91.1% 14.0%
None 0.53 45.0 2.93e-01 100.0% 59.3%
None 0.53 45.0 2.94e-01 100.0% 60.4%
4029963 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 38.0 3.13e-01 98.2% 39.1%
3342083 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 42.0 2.73e-01 92.9% 21.7%
3796107 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.52 38.0 3.31e-01 96.4% 50.0%
3581353 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 44.0 2.77e-01 100.0% 20.6%
3481353 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.54e-01 91.1% 16.8%
3336503 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.50 35.0 2.82e-01 98.2% 34.4%