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MK016493.1__AYQ99255.1__PBI_CANTARE_35__00035
Bact-VirMK016493.1__AYQ99255.1__PBI_CANTARE_35__00035
Identity
- Accession:
- MK016493 ↗
- Kingdom:
- phage
Quality
52.0
mean pLDDT
Taxonomy
TaxID: 2338395
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 295-427
D2
high
residues 461-536
D3
high
residues 560-662
Domain cluster:
rep: MT498043.1__QKY78982.1__Jinkies_34__00034__D259-343
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4futA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.71 | 53.0 | 5.29e-01 | 99.0% | 76.2% |
| 1hh2P04 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.71 | 44.0 | 5.31e-01 | 80.6% | 95.6% |
| 4oxiA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.71 | 50.0 | 5.14e-01 | 98.1% | 76.5% |
| 2v7bA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.69 | 53.0 | 5.46e-01 | 99.0% | 84.5% |
| 4iz6A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.68 | 52.0 | 5.15e-01 | 99.0% | 77.4% |
| 2z51A02 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.66 | 41.0 | 4.78e-01 | 72.8% | 90.3% |
| 2cxcA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.66 | 41.0 | 4.87e-01 | 76.7% | 94.2% |
| 5nfmA00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.65 | 45.0 | 5.15e-01 | 77.7% | 97.3% |
| 1lqlA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.65 | 47.0 | 4.79e-01 | 75.7% | 89.3% |
| 2nclA00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.64 | 44.0 | 4.93e-01 | 76.7% | 90.1% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 45.0 | 4.07e-01 | 72.8% | 59.9% |
| 4alzA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 39.0 | 4.62e-01 | 74.8% | 96.9% |
| 3tr3A00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.62 | 43.0 | 4.87e-01 | 80.6% | 97.4% |
| 4dcuA03 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.62 | 45.0 | 4.95e-01 | 75.7% | 98.8% |
| 1ylqA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 42.0 | 4.43e-01 | 75.7% | 79.6% |
| 1mkyA03 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.60 | 45.0 | 4.75e-01 | 77.7% | 88.9% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 34.0 | 3.50e-01 | 80.6% | 58.3% |
| 1josA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 47.0 | 4.75e-01 | 99.0% | 92.0% |
| 4l4qA02 | 3.30.300.340 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, N-terminal domain | 0.56 | 48.0 | 4.53e-01 | 94.2% | 85.0% |
| 4m1aA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 45.0 | 4.53e-01 | 100.0% | 88.8% |
| 2rffA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 41.0 | 4.08e-01 | 98.1% | 75.7% |
| 2kz0A01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.54 | 35.0 | 4.07e-01 | 75.7% | 97.2% |
| 1no5B00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 43.0 | 4.41e-01 | 97.1% | 88.2% |
| 3bl4A01 | 3.40.1680.10 | Alpha Beta › 3-Layer(aba) Sandwich › yp_829618.1 fold › yp_829618.1 domain like | 0.53 | 31.0 | 3.48e-01 | 76.7% | 79.2% |
| 6rk7B02 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 48.0 | 4.44e-01 | 100.0% | 93.0% |
| 6upsA01 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.52 | 44.0 | 3.89e-01 | 95.1% | 87.7% |
| 3h5kA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.51 | 44.0 | 3.75e-01 | 99.0% | 95.5% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003241 | 102.7.1.1 ↗ | alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I | 0.78 | 52.0 | 5.05e-01 | 75.7% | 61.7% |
| 5005883 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.72 | 54.0 | 5.51e-01 | 99.0% | 80.0% |
| 4993777 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.72 | 45.0 | 4.87e-01 | 76.7% | 73.9% |
| 4952836 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.72 | 48.0 | 5.15e-01 | 86.4% | 78.9% |
| 4176696 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.71 | 47.0 | 5.29e-01 | 77.7% | 87.5% |
| 4243944 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.71 | 51.0 | 5.20e-01 | 99.0% | 77.0% |
| 1487481 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.71 | 50.0 | 5.11e-01 | 98.1% | 75.8% |
| 3961151 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.70 | 53.0 | 4.19e-01 | 99.0% | 39.5% |
| 4243535 | 327.13.1.15 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › Spore_YhcN_YlaJ | 0.70 | 47.0 | 5.47e-01 | 98.1% | 94.7% |
| 5014917 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.70 | 42.0 | 5.08e-01 | 72.8% | 95.4% |
| 5047895 | 327.5.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 | 0.69 | 49.0 | 5.08e-01 | 98.1% | 78.9% |
| 3960560 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.69 | 50.0 | 4.62e-01 | 100.0% | 60.0% |
| 3954285 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.68 | 50.0 | 3.34e-01 | 99.0% | 20.3% |
| 3958042 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.68 | 50.0 | 4.95e-01 | 100.0% | 72.7% |
| 3957515 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.67 | 50.0 | 4.89e-01 | 99.0% | 70.4% |
| 4933961 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.67 | 41.0 | 2.71e-01 | 75.7% | 15.9% |
| 4422829 | 327.5.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 | 0.67 | 49.0 | 5.10e-01 | 98.1% | 83.2% |
| 3287751 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.66 | 50.0 | 3.96e-01 | 100.0% | 39.5% |
| 3947856 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.66 | 52.0 | 5.02e-01 | 99.0% | 74.8% |
| 5871 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.65 | 47.0 | 4.26e-01 | 75.7% | 65.2% |
| 3480890 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.64 | 43.0 | 4.67e-01 | 77.7% | 83.5% |
| 5038488 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.63 | 44.0 | 4.51e-01 | 74.8% | 74.0% |
| 4932484 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.63 | 44.0 | 4.49e-01 | 80.6% | 74.0% |
| 3196780 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.63 | 46.0 | 4.77e-01 | 100.0% | 82.1% |
| 3196422 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.63 | 44.0 | 4.66e-01 | 75.7% | 82.2% |
| 5073359 | 7584.1.1.8 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.62 | 48.0 | 3.17e-01 | 99.0% | 19.5% |
| 5072447 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.62 | 47.0 | 4.72e-01 | 83.5% | 78.1% |
| 3564216 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.62 | 46.0 | 4.87e-01 | 100.0% | 90.0% |
| 4989145 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.61 | 49.0 | 4.64e-01 | 86.4% | 88.8% |
| 3351249 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.61 | 55.0 | 5.13e-01 | 99.0% | 81.6% |
| 3198317 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.60 | 44.0 | 4.59e-01 | 99.0% | 84.2% |
| 4988287 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.60 | 46.0 | 4.88e-01 | 81.6% | 92.2% |
| 5022770 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.59 | 48.0 | 4.62e-01 | 98.1% | 76.5% |
| 5014624 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.59 | 47.0 | 4.69e-01 | 84.5% | 83.7% |
| 4205732 | 327.9.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain › KH_dom-like | 0.58 | 45.0 | 4.49e-01 | 82.5% | 83.8% |
| 4128938 | 327.9.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain › KH_dom-like | 0.56 | 46.0 | 4.76e-01 | 100.0% | 96.8% |
| 3962117 | 2008.1.1.215 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4191 | 0.56 | 37.0 | 3.66e-01 | 81.6% | 62.7% |
| 5031105 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.55 | 49.0 | 4.80e-01 | 100.0% | 94.8% |
| 5001172 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 43.0 | 4.27e-01 | 99.0% | 81.9% |
| 4948129 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 47.0 | 4.72e-01 | 98.1% | 94.3% |
| 4340675 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.54 | 39.0 | 4.12e-01 | 74.8% | 91.1% |
| 4967173 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.53 | 45.0 | 4.49e-01 | 98.1% | 89.5% |
| 5081655 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.53 | 47.0 | 4.78e-01 | 100.0% | 99.0% |
| 4030936 | 2004.1.1.102 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TerL_ATPase | 0.53 | 44.0 | 3.25e-01 | 97.1% | 66.2% |
| 4986446 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 45.0 | 4.47e-01 | 97.1% | 91.4% |
| 4955521 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 47.0 | 4.36e-01 | 100.0% | 79.2% |
| 4682878 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 43.0 | 2.70e-01 | 93.2% | 63.3% |
D4
medium
residues 1-56
D5
medium
residues 98-250