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MK016493.1__AYQ99341.1__PBI_CANTARE_121__00121

Bact-Vir

MK016493.1__AYQ99341.1__PBI_CANTARE_121__00121

Identity

Accession:
MK016493 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cantarevirus› Brevibacterium_phage_Cantare

TaxID: 2338395

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.91 78.0 6.17e-01 92.1% 48.6%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.90 68.0 6.25e-01 82.9% 63.2%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.90 82.0 5.61e-01 100.0% 31.4%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.89 69.0 6.27e-01 80.3% 86.5%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.88 64.0 4.94e-01 81.6% 37.2%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 59.0 5.89e-01 76.3% 67.9%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 60.0 7.09e-01 71.1% 100.0%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.86 68.0 7.36e-01 88.2% 98.4%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.85 64.0 6.70e-01 78.9% 94.1%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.84 63.0 6.36e-01 81.6% 77.6%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 76.0 5.22e-01 100.0% 31.2%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 58.0 6.39e-01 73.7% 88.7%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 72.0 6.44e-01 94.7% 72.4%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.82 69.0 4.42e-01 89.5% 21.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.81 69.0 6.18e-01 90.8% 67.6%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.81 70.0 5.52e-01 92.1% 48.3%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.81 60.0 4.33e-01 84.2% 29.9%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.81 62.0 5.05e-01 82.9% 45.6%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.81 75.0 5.40e-01 100.0% 64.8%
4lwsB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 68.0 6.52e-01 98.7% 80.7%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 73.0 6.60e-01 100.0% 74.3%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.79 58.0 5.18e-01 77.6% 55.7%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 69.0 4.94e-01 100.0% 33.6%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 59.0 5.32e-01 80.3% 60.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.77 64.0 6.21e-01 98.7% 81.2%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 55.0 5.66e-01 77.6% 79.5%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.76 63.0 5.74e-01 88.2% 68.4%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 57.0 6.13e-01 78.9% 93.8%
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 67.0 6.58e-01 94.7% 95.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 59.0 5.45e-01 86.8% 66.7%
5bqnA02 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.74 65.0 4.11e-01 96.1% 68.4%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 67.0 6.03e-01 100.0% 75.7%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 54.0 5.69e-01 81.6% 86.8%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.73 55.0 4.21e-01 81.6% 36.6%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.72 59.0 4.96e-01 90.8% 53.1%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.72 56.0 4.53e-01 84.2% 45.2%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.71 55.0 4.58e-01 85.5% 46.8%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 56.0 5.63e-01 86.8% 84.6%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.71 54.0 5.54e-01 81.6% 93.0%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 51.0 5.37e-01 81.6% 88.2%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 53.0 5.36e-01 84.2% 81.8%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 54.0 5.33e-01 85.5% 80.7%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.69 48.0 4.81e-01 72.4% 86.8%
4q4hB01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.69 61.0 3.99e-01 100.0% 23.1%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 53.0 4.86e-01 92.1% 66.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 5.03e-01 78.9% 84.5%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.66 56.0 5.32e-01 98.7% 81.1%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.64 49.0 5.03e-01 90.8% 89.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3564399 3755.3.1.282 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tmemb_cc2 0.93 81.0 6.85e-01 90.8% 63.5%
4073193 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.93 83.0 6.95e-01 94.7% 60.8%
3599773 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.92 83.0 5.96e-01 100.0% 37.9%
3949790 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.92 80.0 7.13e-01 90.8% 72.0%
3385272 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.90 84.0 4.64e-01 100.0% 29.9%
3433708 192.29.1.217 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › MCAfunc 0.89 69.0 6.16e-01 80.3% 61.0%
3934625 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.89 64.0 5.29e-01 84.2% 45.6%
3560750 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.88 72.0 7.48e-01 85.5% 92.9%
4817720 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.87 74.0 4.80e-01 89.5% 23.2%
3554294 603.2.1.1 ↗ alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.87 80.0 5.78e-01 100.0% 39.5%
5024408 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.86 80.0 5.85e-01 100.0% 41.6%
4971990 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 76.0 5.57e-01 100.0% 38.8%
3494190 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.85 78.0 6.14e-01 100.0% 51.3%
4384750 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.85 75.0 6.90e-01 98.7% 74.7%
3475117 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.85 75.0 6.02e-01 97.4% 51.7%
4018104 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 78.0 5.10e-01 100.0% 42.7%
5028533 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.84 76.0 6.31e-01 100.0% 62.3%
3318681 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.84 77.0 5.09e-01 100.0% 44.9%
3594525 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.84 65.0 5.85e-01 81.6% 63.0%
3387239 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 78.0 6.55e-01 100.0% 95.8%
3493328 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.83 75.0 6.30e-01 100.0% 61.6%
None — 0.83 76.0 5.34e-01 100.0% 72.9%
3239971 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.83 76.0 5.29e-01 100.0% 54.3%
4360895 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.82 62.0 5.39e-01 77.6% 99.0%
3164951 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.82 74.0 5.67e-01 100.0% 48.2%
3962893 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.81 70.0 6.46e-01 94.7% 75.8%
4386662 3291.1.1.158 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N 0.80 73.0 6.27e-01 98.7% 65.2%
3734442 192.8.1.35 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 0.80 62.0 5.11e-01 81.6% 52.3%
3831567 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 73.0 5.55e-01 100.0% 45.3%
3628737 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 73.0 5.08e-01 100.0% 32.8%
3256420 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.79 73.0 4.88e-01 100.0% 28.5%
3953227 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.79 61.0 5.52e-01 81.6% 70.0%
5046057 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 60.0 6.37e-01 81.6% 96.9%
3187178 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.79 71.0 5.21e-01 100.0% 40.0%
3170876 192.7.1.30 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › CUX1_N 0.78 64.0 5.62e-01 90.8% 60.0%
2055366 622.1.1.2 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HsbA 0.78 50.0 4.91e-01 89.5% 61.0%
3576254 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 61.0 3.58e-01 84.2% 11.4%
3832457 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.76 67.0 4.76e-01 100.0% 75.7%
3216480 5001.1.1.84 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz 0.76 64.0 4.19e-01 90.8% 22.6%
5064123 601.14.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.75 54.0 4.83e-01 78.9% 54.3%
3786359 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.74 65.0 5.96e-01 98.7% 75.0%
None — 0.74 61.0 4.42e-01 88.2% 97.5%
4025 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.74 59.0 5.45e-01 86.8% 66.7%
3443076 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 50.0 3.00e-01 75.0% 11.2%
3622845 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.68 57.0 4.89e-01 94.7% 58.4%
3602521 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.68 59.0 4.69e-01 98.7% 49.4%
3315495 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.66 51.0 4.98e-01 85.5% 78.8%
5055977 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.66 54.0 4.95e-01 94.7% 68.0%