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MK016494.1__AYQ99432.1__PBI_FILUZINO_87__00087

Bact-Vir

MK016494.1__AYQ99432.1__PBI_FILUZINO_87__00087

Identity

Accession:
MK016494 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_Filuzino

TaxID: 2484209

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-84
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.63 45.0 4.22e-01 76.0% 89.5%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.60 47.0 3.91e-01 86.7% 87.6%
1ffvB05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.55 38.0 3.58e-01 77.3% 56.7%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 45.0 3.17e-01 96.0% 62.0%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 40.0 2.99e-01 82.7% 56.5%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.52 38.0 3.80e-01 80.0% 78.2%
4durB01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.51 37.0 3.60e-01 74.7% 76.5%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.50 37.0 2.71e-01 77.3% 47.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389034 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.72 45.0 5.12e-01 76.0% 85.5%
3404255 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.72 43.0 5.10e-01 70.7% 90.0%
3911249 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.67 45.0 4.18e-01 73.3% 54.7%
4926895 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 46.0 4.25e-01 72.0% 87.4%
4954188 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.66 46.0 3.64e-01 73.3% 67.1%
4929060 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 46.0 4.24e-01 74.7% 89.0%
4403464 386.1.1.77 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › OrsD 0.65 45.0 3.70e-01 72.0% 87.7%
4636769 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.64 48.0 3.99e-01 81.3% 88.9%
4974063 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.63 48.0 4.46e-01 81.3% 95.8%
4311079 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.63 48.0 4.38e-01 82.7% 90.9%
4358932 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.62 48.0 3.95e-01 82.7% 89.6%
4315538 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.61 49.0 3.96e-01 88.0% 86.2%
5080080 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.60 43.0 2.74e-01 77.3% 14.5%
5052100 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.60 47.0 3.31e-01 86.7% 99.2%
3859590 386.1.1.248 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.60 39.0 4.45e-01 80.0% 100.0%
3932578 304.24.1.7 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V_ATPase_I 0.58 42.0 3.87e-01 77.3% 87.0%
3340123 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.58 42.0 4.05e-01 78.7% 71.1%
1392732 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.56 40.0 3.59e-01 77.3% 55.7%
4458441 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.56 44.0 3.55e-01 88.0% 46.5%
3553026 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.56 37.0 3.50e-01 77.3% 54.7%
3988217 241.12.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.55 36.0 2.73e-01 70.7% 25.0%
3782443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 48.0 3.74e-01 100.0% 90.9%
3663256 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.54 39.0 3.37e-01 77.3% 62.5%
4945301 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 36.0 3.04e-01 72.0% 78.7%
3593119 3351.1.1.0 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.53 35.0 2.97e-01 72.0% 38.5%
3241250 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 36.0 3.27e-01 72.0% 49.5%
3172632 221.1.1.93 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.51 38.0 3.19e-01 80.0% 50.4%
3737722 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.51 36.0 3.24e-01 74.7% 67.3%