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MK016662.1__QBP05844.1__X__00049
Bact-VirMK016662.1__QBP05844.1__X__00049
Identity
- Accession:
- MK016662 ↗
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Qadamvirus›
Synechococcus_phage_S-B28
TaxID: 2545435
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-58
Domain cluster:
rep: KM359505.1__AIR93619.1__X__00074__D4-51
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7uuim02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.73 | 59.0 | 4.98e-01 | 89.8% | 59.3% |
| 3cnlA02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.69 | 53.0 | 4.30e-01 | 83.7% | 47.3% |
| 1bhpA00 | 3.30.1350.10 | Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like | 0.65 | 48.0 | 5.02e-01 | 91.8% | 88.9% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.01e-01 | 100.0% | 52.6% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.61 | 53.0 | 4.13e-01 | 100.0% | 80.9% |
| 2jvgA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.55 | 44.0 | 4.01e-01 | 95.9% | 66.7% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.88e-01 | 89.8% | 79.3% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 44.0 | 3.54e-01 | 100.0% | 91.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838024 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.80 | 59.0 | 6.40e-01 | 95.9% | 97.5% |
| 3602155 | 2004.1.1.422 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, RsgA_GTPase | 0.77 | 65.0 | 4.02e-01 | 91.8% | 19.2% |
| 5015721 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.77 | 64.0 | 3.93e-01 | 91.8% | 17.9% |
| 5057992 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.76 | 63.0 | 3.94e-01 | 91.8% | 18.5% |
| 1954739 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.65 | 56.0 | 3.94e-01 | 100.0% | 39.1% |
| 5025683 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.64 | 41.0 | 3.95e-01 | 98.0% | 58.2% |
| 4318044 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.61 | 41.0 | 3.34e-01 | 71.4% | 74.4% |
| 4981749 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.61 | 40.0 | 3.78e-01 | 91.8% | 56.7% |
| 4093593 | 2007.1.14.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase | 0.59 | 43.0 | 2.91e-01 | 77.6% | 78.9% |
| 4959187 | 101.1.2.489 ↗ | alpha arrays › HTH › HTH › winged helix domain › Transposase_mut | 0.58 | 45.0 | 4.52e-01 | 100.0% | 88.0% |
| 3929245 | 101.1.1.103 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 | 0.57 | 46.0 | 4.54e-01 | 100.0% | 83.6% |
| 4944303 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.56 | 44.0 | 3.47e-01 | 95.9% | 62.4% |
| 3618002 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 35.0 | 3.07e-01 | 71.4% | 67.1% |
D2
high
residues 76-184
Domain cluster:
rep: KY316062.1__APU00330.1__X__00043__D11-22_121-212