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MK016662.1__QBP05845.1__X__00050

Bact-Vir

MK016662.1__QBP05845.1__X__00050

Identity

Accession:
MK016662 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Qadamvirus› Synechococcus_phage_S-B28

TaxID: 2545435

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-57
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.69 54.0 4.56e-01 87.3% 65.3%
1hwyA01 1.10.287.140 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 42.0 4.39e-01 85.5% 68.6%
2datA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.67 52.0 4.07e-01 85.5% 61.0%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.65 45.0 3.85e-01 72.7% 52.8%
4uz0A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 56.0 4.87e-01 100.0% 63.2%
1x3aA00 1.10.3970.10 Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain 0.64 49.0 4.13e-01 92.7% 48.0%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.63 48.0 3.85e-01 83.6% 63.6%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.63 46.0 4.11e-01 80.0% 55.6%
2blfB01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.61 44.0 4.29e-01 89.1% 69.8%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.61 52.0 4.67e-01 100.0% 79.0%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.61 49.0 3.91e-01 94.5% 84.3%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 47.0 3.92e-01 94.5% 83.6%
4dolA02 1.10.890.20 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.57 40.0 4.11e-01 74.5% 78.4%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 48.0 4.09e-01 96.4% 68.1%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 47.0 2.94e-01 94.5% 97.3%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 4.65e-01 100.0% 98.1%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 48.0 4.30e-01 94.5% 82.7%
3nb0B02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 46.0 3.01e-01 92.7% 96.7%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.55 40.0 3.42e-01 81.8% 48.9%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 36.0 3.37e-01 70.9% 98.7%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.54 37.0 3.11e-01 70.9% 78.8%
5afdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 39.0 2.60e-01 90.9% 40.3%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 35.0 2.71e-01 72.7% 58.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588971 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.71 49.0 4.44e-01 74.5% 53.3%
3661564 4299.1.1.0 ↗ alpha arrays › BSD domain › BSD domain › BSD domain 0.68 55.0 4.98e-01 94.5% 65.0%
4024202 4299.1.1.1 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.67 57.0 4.82e-01 100.0% 57.8%
4939550 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.65 45.0 3.76e-01 72.7% 52.6%
4520559 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.65 47.0 4.11e-01 78.2% 51.8%
143247 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.65 47.0 4.15e-01 78.2% 53.7%
3644806 4299.1.1.1 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.63 51.0 4.57e-01 96.4% 62.5%
4239 5069.1.3.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.62 50.0 3.93e-01 94.5% 79.1%
3474039 4299.1.1.1 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.61 50.0 4.23e-01 100.0% 52.4%
3300392 4299.1.1.1 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.59 44.0 4.18e-01 89.1% 68.1%
4025710 3871.1.1.0 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.57 46.0 3.65e-01 94.5% 88.8%
4662540 633.31.1.0 ↗ alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase 0.57 45.0 4.21e-01 94.5% 70.7%
4572867 601.2.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 0.52 44.0 3.20e-01 94.5% 95.5%
3719307 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.51 38.0 2.68e-01 81.8% 22.5%
None — 0.51 40.0 2.57e-01 94.5% 33.1%
D2 medium residues 60-101
PDB
Domain cluster: representative