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MK016663.1__QBP05869.1__X__00019

Bact-Vir

MK016663.1__QBP05869.1__X__00019

Identity

Accession:
MK016663 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-H68

TaxID: 2545436

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-94
PDB
Domain cluster: rep: NC_018272.1__YP_006560447.1__B618_gp48__00048__D3-78
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.69 46.0 5.05e-01 100.0% 85.1%
2ahoB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 35.0 3.70e-01 81.5% 62.5%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.60 39.0 3.77e-01 94.6% 58.3%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 33.0 3.61e-01 81.5% 68.9%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.54 38.0 2.83e-01 72.8% 81.6%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.53 40.0 3.75e-01 94.6% 64.4%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.45e-01 83.7% 75.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.34e-01 100.0% 95.5%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 31.0 3.27e-01 71.7% 64.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 29.0 3.39e-01 94.6% 81.7%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 30.0 3.45e-01 95.7% 85.2%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 36.0 3.21e-01 73.9% 87.5%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 29.0 3.41e-01 94.6% 86.2%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 29.0 3.39e-01 94.6% 87.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 31.0 3.61e-01 96.7% 94.9%
3qwxX01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.32e-01 72.8% 67.0%
2kt9A01 3.30.390.140 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 35.0 3.46e-01 100.0% 67.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
997 220.2.1.1 ↗ beta barrels › PH domain-like › PA2021-like › PA2021-like › DUF3203 0.69 46.0 5.05e-01 100.0% 85.1%
185084 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 40.0 4.64e-01 93.5% 98.3%
3237798 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.63 48.0 4.20e-01 100.0% 54.3%
3783790 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.62 52.0 4.76e-01 100.0% 70.8%
3999570 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.61 48.0 4.68e-01 100.0% 75.2%
3910607 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 36.0 4.10e-01 94.6% 82.8%
3568225 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 4.14e-01 100.0% 57.7%
3929075 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.99e-01 100.0% 55.2%
3396821 5.1.4.253 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Gbeta 0.57 41.0 2.81e-01 75.0% 27.4%
3315491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.21e-01 100.0% 60.7%
3620446 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.04e-01 100.0% 58.6%
5047735 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.88e-01 100.0% 53.7%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 33.0 3.74e-01 94.6% 83.3%
3264423 300.1.1.2 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.56 46.0 3.36e-01 92.4% 56.1%
1280955 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 36.0 4.18e-01 93.5% 98.4%
3902975 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 33.0 3.78e-01 93.5% 86.7%
3990088 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.56 34.0 2.81e-01 75.0% 31.4%
4863562 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.55 33.0 3.35e-01 72.8% 57.9%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.54 38.0 2.89e-01 72.8% 36.4%
5058911 2.7.1.0 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.54 40.0 3.84e-01 80.4% 77.3%
3211347 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 48.0 4.39e-01 100.0% 80.0%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 31.0 3.60e-01 94.6% 87.9%
3475756 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 32.0 3.45e-01 95.7% 72.0%
3574751 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 28.0 3.35e-01 93.5% 92.0%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 30.0 3.30e-01 94.6% 72.9%
3890893 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 30.0 3.47e-01 94.6% 92.7%
3234947 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 29.0 3.30e-01 94.6% 76.9%
3783847 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 31.0 3.41e-01 96.7% 83.1%
5035527 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.50 38.0 3.60e-01 90.2% 67.3%
3784283 319.1.1.6 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › Pih1_fungal_CS 0.50 36.0 3.73e-01 100.0% 83.1%
D2 high residues 295-530
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.75 50.0 5.49e-01 82.2% 80.1%
6nu8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.67 35.0 4.43e-01 75.0% 82.5%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 40.0 4.33e-01 75.0% 69.3%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 39.0 4.13e-01 75.0% 66.4%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 34.0 4.38e-01 75.0% 89.6%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 40.0 4.34e-01 90.7% 76.4%
3gneB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 4.18e-01 77.5% 70.2%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 38.0 4.21e-01 100.0% 84.5%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.56 41.0 4.41e-01 100.0% 88.9%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.88e-01 75.4% 67.3%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.52 23.0 3.28e-01 100.0% 85.8%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.50 24.0 3.34e-01 95.8% 94.3%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715482 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.79 55.0 5.57e-01 100.0% 71.7%
3610402 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.78 53.0 5.57e-01 100.0% 74.1%
5059747 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.77 50.0 5.21e-01 82.2% 69.5%
3501831 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.76 49.0 5.26e-01 83.9% 74.6%
3479552 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.75 48.0 5.17e-01 82.2% 75.0%
3992573 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 52.0 5.41e-01 100.0% 74.7%
2491351 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.72 53.0 5.32e-01 100.0% 73.0%
3627339 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.71 45.0 4.84e-01 100.0% 73.5%
3497266 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 45.0 4.75e-01 100.0% 74.4%
3739398 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.66 40.0 4.60e-01 91.1% 81.2%
3474665 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.65 45.0 5.03e-01 100.0% 86.8%
5019985 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 41.0 4.32e-01 78.4% 71.0%
4966157 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 44.0 4.82e-01 98.7% 85.8%
3723348 10.1.1.73 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26113 0.63 43.0 4.10e-01 78.4% 59.1%
4013311 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.62 42.0 4.23e-01 91.1% 67.7%
3599615 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.61 40.0 4.38e-01 91.9% 79.5%
4015604 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 46.0 4.05e-01 87.7% 53.7%
5004195 10.1.1.64 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.61 41.0 3.90e-01 79.7% 57.5%
3608442 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 38.0 4.03e-01 82.6% 68.6%
2325788 10.1.1.47 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Polysacc_lyase_14 0.59 42.0 4.21e-01 78.0% 70.8%
3481058 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 45.0 4.76e-01 100.0% 87.9%
4018159 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.57 44.0 4.27e-01 99.2% 72.5%
1890046 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 39.0 4.28e-01 91.9% 88.1%
3659345 10.1.1.12 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.56 42.0 3.84e-01 78.8% 59.7%
3175648 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.55 44.0 3.94e-01 97.9% 60.9%
4608534 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.54 43.0 3.87e-01 97.9% 59.4%
3488117 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 34.0 3.87e-01 76.7% 84.1%
5009919 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 40.0 4.28e-01 100.0% 87.1%
3482862 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 4.44e-01 100.0% 87.9%
3704753 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 4.29e-01 100.0% 86.7%
D3 medium residues 590-613_634-689_735-774
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 57.0 4.79e-01 100.0% 79.6%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 51.0 4.32e-01 100.0% 75.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014464 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.64 59.0 4.74e-01 100.0% 69.8%
3497350 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 57.0 4.85e-01 100.0% 77.4%
3810972 10.1.1.12 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.56 51.0 4.03e-01 100.0% 60.8%
4020125 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 50.0 3.78e-01 100.0% 53.0%
3190212 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.56 50.0 3.71e-01 100.0% 49.7%
3293710 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.54 48.0 3.78e-01 99.2% 69.8%
3298595 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.51 44.0 4.03e-01 94.2% 89.7%
D4 medium residues 614-633_690-734_775-786_821-849
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 61.0 4.79e-01 100.0% 85.9%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 4.02e-01 70.8% 93.0%
3cmbA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.53 37.0 2.80e-01 70.8% 84.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074891 4295.1.1.1 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC 0.55 38.0 2.90e-01 70.8% 81.2%
3497119 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.54 41.0 3.16e-01 81.1% 54.3%
4097285 281.1.1.1 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.51 41.0 3.14e-01 85.8% 78.8%