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MK016664.1__QBP06016.1__X__00049

Bact-Vir

MK016664.1__QBP06016.1__X__00049

Identity

Accession:
MK016664 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-B68

TaxID: 2545437

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-29_231-299
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 43.0 2.76e-01 77.8% 21.9%
3mzoB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 43.0 3.15e-01 79.0% 79.0%
2vtyA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.57 38.0 3.17e-01 100.0% 38.2%
5gxvA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 41.0 3.90e-01 79.0% 78.1%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 37.0 3.21e-01 100.0% 48.4%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.50 35.0 3.69e-01 74.1% 94.5%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 37.0 2.81e-01 80.2% 34.5%
6en3A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 45.0 2.96e-01 100.0% 36.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3467802 603.1.1.226 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF26740 0.62 44.0 3.65e-01 100.0% 41.4%
137177 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.59 45.0 4.13e-01 82.7% 99.1%
3495422 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.57 33.0 2.96e-01 96.3% 40.0%
5050704 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 42.0 4.03e-01 79.0% 95.8%
3891469 109.4.1.926 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FH3_FHOD1-3 0.55 48.0 4.20e-01 92.6% 85.2%
3656975 3981.1.1.1 ↗ alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › UPF0203 0.55 33.0 3.59e-01 70.4% 71.4%
3692194 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.54 41.0 4.15e-01 98.8% 81.2%
3955636 604.12.1.106 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF28475 0.54 37.0 3.87e-01 100.0% 78.7%
3594436 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.52 40.0 3.58e-01 82.7% 88.3%
3382796 109.4.1.446 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_mid 0.52 46.0 3.27e-01 98.8% 94.8%
3271597 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.51 39.0 2.47e-01 80.2% 19.0%
3498914 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.51 35.0 3.34e-01 71.6% 98.9%
D2 medium residues 53-123
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fy7A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 47.0 3.88e-01 83.1% 43.3%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 33.0 3.69e-01 87.3% 78.4%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.77e-01 97.2% 88.9%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.52e-01 88.7% 84.8%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.53 41.0 3.64e-01 88.7% 66.1%
3lulA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 43.0 3.82e-01 100.0% 93.8%
2zgiA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 39.0 3.63e-01 88.7% 81.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3790600 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.70 56.0 4.24e-01 87.3% 41.8%
4261250 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.68 54.0 3.95e-01 87.3% 32.6%
3354564 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 35.0 3.85e-01 94.4% 70.0%
3409590 375.1.1.89 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.53 40.0 4.20e-01 97.2% 87.7%
4118447 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.53 39.0 2.82e-01 83.1% 88.1%
2802035 4020.1.1.1 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.51 43.0 3.74e-01 100.0% 90.2%
3709966 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.50 43.0 3.30e-01 98.6% 65.7%