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MK016664.1__QBP06058.1__X__00091

Bact-Vir

MK016664.1__QBP06058.1__X__00091

Identity

Accession:
MK016664 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-B68

TaxID: 2545437

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-67
PDB
Domain cluster: rep: IMGVR_UViG_3300002514_004540-3300002514-JGI25133J35611_1000378914__D11-69
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27001.1 best Phage_T4_Y07B 31.6 2.20e-07 76.7% 46.0%
D2 medium residues 84-120
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 77.0 5.82e-01 100.0% 57.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 77.0 6.82e-01 100.0% 94.3%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 65.0 5.71e-01 100.0% 93.4%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 66.0 5.24e-01 100.0% 67.5%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 64.0 4.85e-01 100.0% 55.1%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 4.95e-01 100.0% 52.8%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 62.0 5.61e-01 100.0% 94.7%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 62.0 5.40e-01 100.0% 89.1%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 60.0 4.84e-01 100.0% 64.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 59.0 5.31e-01 100.0% 94.9%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 58.0 5.16e-01 100.0% 88.9%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 59.0 5.15e-01 100.0% 76.6%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 57.0 4.81e-01 100.0% 71.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 59.0 5.09e-01 100.0% 83.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 4.93e-01 100.0% 79.4%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 4.99e-01 100.0% 91.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 4.78e-01 100.0% 82.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 54.0 4.97e-01 100.0% 96.6%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 56.0 4.99e-01 100.0% 90.2%
2jgtA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 47.0 3.29e-01 83.8% 68.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.61e-01 100.0% 68.3%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 50.0 4.25e-01 100.0% 78.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.29e-01 100.0% 72.7%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 47.0 4.30e-01 100.0% 95.3%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.26e-01 100.0% 65.0%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.57 46.0 3.50e-01 94.6% 49.0%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.06e-01 89.2% 93.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277206 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 83.0 6.35e-01 100.0% 67.9%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.88 77.0 5.56e-01 100.0% 47.0%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 71.0 7.00e-01 94.6% 95.0%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 71.0 6.28e-01 100.0% 85.5%
3899829 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.82 69.0 5.59e-01 100.0% 72.0%
3801791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 70.0 5.87e-01 100.0% 69.2%
3846069 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 67.0 5.70e-01 100.0% 83.1%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 67.0 5.33e-01 100.0% 67.5%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 69.0 6.10e-01 100.0% 72.7%
165657 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 66.0 5.54e-01 100.0% 80.6%
3575263 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 64.0 5.50e-01 100.0% 83.1%
3625909 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 63.0 5.13e-01 100.0% 67.5%
3261986 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 63.0 5.62e-01 100.0% 91.5%
3910605 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 63.0 5.07e-01 100.0% 75.0%
3509345 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 61.0 4.51e-01 94.6% 54.3%
3516244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 62.0 5.04e-01 100.0% 67.5%
3747208 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 63.0 5.05e-01 100.0% 67.5%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 62.0 4.88e-01 100.0% 62.9%
3259033 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 63.0 5.53e-01 100.0% 90.0%
3269758 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 62.0 4.99e-01 100.0% 67.5%
3618274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 61.0 4.78e-01 100.0% 60.0%
3234274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 61.0 5.15e-01 100.0% 80.0%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 58.0 5.36e-01 97.3% 96.4%
162441 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 59.0 5.01e-01 100.0% 76.1%
25699 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 60.0 5.45e-01 100.0% 98.2%
3539147 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 59.0 5.04e-01 100.0% 77.1%
3543889 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 59.0 3.41e-01 100.0% 12.9%
3269589 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 58.0 4.95e-01 100.0% 77.1%
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 5.61e-01 100.0% 82.0%
2636173 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 55.0 4.85e-01 100.0% 83.1%
4945288 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.48e-01 100.0% 97.7%
4972823 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.95e-01 100.0% 82.0%
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.45e-01 100.0% 88.9%
5004462 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.60 46.0 3.65e-01 94.6% 50.0%
3295024 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 42.0 4.22e-01 97.3% 89.5%
3438163 4135.1.1.1 ↗ beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk 0.53 41.0 2.85e-01 100.0% 93.3%
4949985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.29e-01 100.0% 75.0%