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MK016664.1__QBP06083.1__X__00116
Bact-VirMK016664.1__QBP06083.1__X__00116
Identity
- Accession:
- MK016664 ↗
- Kingdom:
- phage
Quality
94.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_S-B68
TaxID: 2545437
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 3.50e-01 | 100.0% | 48.4% |
| 2jigA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.51 | 39.0 | 2.79e-01 | 96.2% | 90.8% |
| 2kwpA00 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.50 | 41.0 | 3.25e-01 | 100.0% | 44.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599479 | 3910.1.1.1 ↗ | extended segments › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › PMC2NT | 0.59 | 40.0 | 3.31e-01 | 100.0% | 38.0% |
| 3548065 | 922.1.1.28 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › AMOP | 0.59 | 46.0 | 3.42e-01 | 96.2% | 32.2% |
| 3995563 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.57 | 38.0 | 3.90e-01 | 98.1% | 74.0% |
| 3968190 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 44.0 | 3.66e-01 | 92.5% | 95.8% |
| 3962549 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 36.0 | 2.64e-01 | 75.5% | 34.7% |
| 4929021 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 42.0 | 2.96e-01 | 100.0% | 27.8% |
| 3285873 | 223.1.1.36 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD | 0.51 | 42.0 | 3.07e-01 | 100.0% | 72.8% |
| 4949933 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 39.0 | 2.53e-01 | 96.2% | 16.7% |
| 4261672 | 7527.1.1.2 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 | 0.51 | 36.0 | 2.23e-01 | 79.2% | 41.5% |