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MK016664.1__QBP06156.1__X__00189

Bact-Vir

MK016664.1__QBP06156.1__X__00189

Identity

Accession:
MK016664 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-B68

TaxID: 2545437

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-53_299-365
PDB
Domain cluster: rep: IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_213093_213854__D8-56_178-240
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF26809.1 best Phage_T4_gp13 86.2 3.70e-24 64.3% 27.2%
PF26809.1 Phage_T4_gp13 53.9 2.70e-14 41.1% 18.1%
D2 high residues 77-184
PDB
Domain cluster: rep: IMGVR_UViG_3300017713_000356-3300017713-Ga0181391_10004821__D555-565_585-697_740-769
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fo8D02 2.40.10.380 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 49.0 5.33e-01 74.1% 100.0%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.63 44.0 4.87e-01 78.7% 90.7%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.63 44.0 4.96e-01 76.9% 98.7%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 47.0 5.11e-01 80.6% 100.0%
4adiB04 2.60.40.2650 Mainly Beta › Sandwich › Immunoglobulin-like › Rubella membrane glycoprotein E1, domain 3 0.57 34.0 3.71e-01 78.7% 71.3%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.97e-01 75.0% 84.7%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.88e-01 72.2% 87.5%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 40.0 3.97e-01 82.4% 79.1%
2zaiB03 2.60.40.3020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.80e-01 76.9% 80.4%
4gpvA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.48e-01 77.8% 88.6%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 35.0 3.75e-01 89.8% 83.0%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 35.0 3.25e-01 75.0% 54.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
358963 10.19.1.1 ↗ beta sandwiches › jelly-roll › Domain I of tail sheath protein Gp18 › Domain I of tail sheath protein Gp18 › Gp18_dom_I 0.68 50.0 5.04e-01 75.9% 87.7%
3407712 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 53.0 5.49e-01 82.4% 100.0%
5046884 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.68 51.0 5.52e-01 78.7% 100.0%
3928362 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 51.0 5.35e-01 79.6% 96.9%
3219717 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 50.0 5.38e-01 77.8% 100.0%
4930314 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.67 49.0 5.36e-01 75.0% 100.0%
4296283 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.65 48.0 5.30e-01 78.7% 100.0%
4567015 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.64 44.0 5.00e-01 76.9% 96.2%
4256469 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.64 43.0 5.05e-01 75.0% 100.0%
4130681 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.64 43.0 5.03e-01 73.1% 100.0%
4155840 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.64 46.0 4.61e-01 75.0% 100.0%
4274453 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.63 47.0 5.13e-01 77.8% 98.8%
4123849 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.63 44.0 4.87e-01 78.7% 91.8%
3698630 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 48.0 4.90e-01 80.6% 99.0%
4229219 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.63 49.0 5.14e-01 82.4% 95.8%
3688604 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 46.0 4.66e-01 75.9% 100.0%
4218835 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.63 48.0 5.12e-01 82.4% 98.9%
4497776 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 44.0 5.01e-01 75.9% 100.0%
3492680 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 43.0 4.22e-01 72.2% 100.0%
4614883 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 44.0 4.95e-01 75.9% 100.0%
4328639 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 46.0 4.90e-01 78.7% 95.8%
4144719 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 43.0 4.92e-01 73.1% 100.0%
4398429 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.61 44.0 4.97e-01 74.1% 100.0%
1688248 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 42.0 4.71e-01 75.0% 97.5%
4317931 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 44.0 4.88e-01 76.9% 100.0%
3809656 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 46.0 4.96e-01 80.6% 98.9%
4308012 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 41.0 4.60e-01 70.4% 100.0%
3275858 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 4.28e-01 76.9% 90.5%
3893939 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.87e-01 74.1% 86.7%
3801941 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.56 43.0 4.27e-01 83.3% 95.7%
4638448 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 35.0 3.62e-01 70.4% 66.7%
5067964 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 4.07e-01 74.1% 83.7%
5013196 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 4.04e-01 73.1% 83.2%
5035871 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 36.0 3.82e-01 73.1% 77.9%
3261760 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.54 36.0 3.92e-01 75.0% 87.1%
5048248 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 35.0 3.82e-01 86.1% 83.5%
3248637 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 33.0 3.74e-01 78.7% 83.7%
5006437 70.2.1.6 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DUF22 0.53 36.0 3.53e-01 70.4% 69.7%
4943023 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 38.0 3.63e-01 76.9% 63.8%
3249576 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.52 35.0 3.79e-01 73.1% 85.9%
3391303 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 36.0 2.56e-01 74.1% 57.0%
5058817 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.50 35.0 3.65e-01 73.1% 81.0%
5058819 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.72e-01 75.0% 83.0%
D3 high residues 196-295
PDB