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MK017819.1__AZF89444.1__CPD4_55__00055

Bact-Vir

MK017819.1__AZF89444.1__CPD4_55__00055

Identity

Accession:
MK017819 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_CPD4

TaxID: 2483607

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-81
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 38.0 4.01e-01 86.3% 70.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 43.0 3.69e-01 76.2% 85.8%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.31e-01 91.3% 36.2%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.46e-01 100.0% 36.8%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.61e-01 100.0% 40.8%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 37.0 2.83e-01 98.8% 28.7%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.56e-01 80.0% 87.4%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.45e-01 100.0% 39.3%
1d2sA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.47e-01 100.0% 41.2%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.55 44.0 3.05e-01 91.3% 26.7%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.54 46.0 3.95e-01 96.2% 97.0%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.51e-01 100.0% 42.3%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 39.0 3.96e-01 96.2% 76.5%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 39.0 3.91e-01 95.0% 73.8%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.94e-01 91.3% 23.6%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.89e-01 91.3% 33.5%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.53 40.0 3.53e-01 82.5% 70.0%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.52 42.0 3.80e-01 86.3% 84.9%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.97e-01 92.5% 25.4%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 41.0 4.05e-01 100.0% 81.9%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.69e-01 100.0% 55.8%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.81e-01 98.8% 77.0%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.62e-01 100.0% 54.6%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.77e-01 100.0% 60.4%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 38.0 3.76e-01 96.2% 75.3%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 46.0 3.83e-01 100.0% 79.3%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.62e-01 100.0% 56.4%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502859 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 48.0 3.27e-01 100.0% 21.8%
3228484 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 35.0 2.44e-01 97.5% 16.1%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 43.0 3.55e-01 71.2% 68.7%
3172856 5.1.4.575 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.61 50.0 3.47e-01 91.3% 29.3%
3759926 5.1.8.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › Kelch_1 0.59 49.0 4.15e-01 91.3% 62.2%
4232128 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.59 37.0 3.76e-01 83.7% 63.7%
5022798 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.05e-01 95.0% 17.3%
3994644 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 45.0 2.60e-01 100.0% 8.4%
5081581 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 47.0 3.47e-01 92.5% 37.4%
3440815 5.1.11.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.57 47.0 3.14e-01 92.5% 26.5%
3212280 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.02e-01 92.5% 19.3%
4951147 881.4.1.0 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.57 45.0 3.89e-01 83.7% 71.7%
3783578 5.1.5.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › ANAPC4_WD40 0.57 41.0 2.89e-01 98.8% 22.1%
3462291 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.57 47.0 3.27e-01 96.2% 46.7%
3508282 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.56 45.0 2.98e-01 92.5% 32.9%
3921189 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.56 44.0 3.50e-01 100.0% 40.0%
3515797 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.55 46.0 3.15e-01 92.5% 36.6%
3468426 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 46.0 3.08e-01 95.0% 41.7%
4088600 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 42.0 4.12e-01 96.2% 75.3%
5045528 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 3.06e-01 92.5% 24.5%
5010861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.92e-01 92.5% 29.1%
4456820 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 40.0 4.02e-01 96.2% 77.5%
3502064 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 44.0 3.89e-01 100.0% 59.4%
4890150 5.1.4.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APH-like_N 0.53 43.0 2.97e-01 92.5% 24.8%
4026544 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.99e-01 92.5% 24.3%
4085280 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 39.0 3.96e-01 96.2% 77.5%
4242523 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 39.0 3.99e-01 96.2% 78.8%
3838921 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.53 39.0 3.91e-01 96.2% 77.5%
5054625 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 40.0 4.03e-01 96.2% 80.0%
4027011 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 3.10e-01 97.5% 33.8%
3411255 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.53 43.0 2.81e-01 92.5% 20.7%
4342778 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.52 42.0 2.59e-01 91.3% 13.8%
3996256 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.52 41.0 4.34e-01 90.0% 95.7%
4961528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.97e-01 92.5% 87.6%
3743467 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.52 43.0 2.89e-01 93.8% 24.7%
5069738 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 42.0 2.64e-01 90.0% 65.2%
3743579 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 41.0 2.88e-01 92.5% 23.9%
3616618 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.88e-01 95.0% 38.9%
3244243 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 40.0 3.09e-01 86.3% 55.9%
3739717 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 39.0 3.84e-01 93.8% 76.5%
3668377 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.60e-01 92.5% 16.4%
4031750 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.50 35.0 3.31e-01 85.0% 59.6%
5056976 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 44.0 4.09e-01 96.2% 78.0%