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MK061410.1__AZF93634.1__SEA_EYES_58__00058

Bact-Vir

MK061410.1__AZF93634.1__SEA_EYES_58__00058

Identity

Accession:
MK061410 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonia_phage_Eyes

TaxID: 2488782

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-148
PDB
Domain cluster: rep: IMGVR_UViG_3300002481_000051-3300002481-JGI24020J35080_100021749__D3-114
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.68 50.0 5.61e-01 81.7% 98.2%
3bamA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.67 51.0 4.49e-01 80.3% 60.7%
6p4wB01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.66 49.0 5.43e-01 88.7% 100.0%
3do6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 55.0 4.32e-01 97.9% 81.6%
3odhA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.62 47.0 4.27e-01 80.3% 63.4%
1j24A00 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 45.0 4.63e-01 84.5% 85.0%
4impA02 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 48.0 4.23e-01 88.7% 75.4%
5b7yA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 44.0 3.61e-01 81.0% 75.1%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 48.0 4.04e-01 90.1% 93.6%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 4.43e-01 85.2% 81.6%
1tg7A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 43.0 3.27e-01 80.3% 78.0%
3regA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 4.52e-01 91.5% 91.8%
2clsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 47.0 4.36e-01 91.5% 93.3%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 4.71e-01 100.0% 94.8%
3eleA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 45.0 3.82e-01 90.8% 59.9%
1srqC02 3.40.50.11210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP 0.53 44.0 4.05e-01 90.8% 83.7%
1zkpC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 42.0 3.54e-01 87.3% 95.1%
4hg2B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 4.22e-01 92.3% 83.3%
2hy1A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 42.0 3.67e-01 89.4% 93.0%
3ghfA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 33.0 3.82e-01 76.8% 92.0%
2z61A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 41.0 3.63e-01 90.1% 58.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589020 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 71.0 7.00e-01 100.0% 89.3%
4941226 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 54.0 5.65e-01 88.0% 78.3%
4030998 2008.1.1.205 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26915 0.76 66.0 5.57e-01 100.0% 58.2%
5043832 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 61.0 6.66e-01 93.7% 99.2%
3973940 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 68.0 5.94e-01 100.0% 80.0%
4931728 2008.1.1.212 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27326 0.72 62.0 5.79e-01 90.1% 87.1%
5014346 2008.1.1.114 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.72 49.0 5.77e-01 85.2% 99.0%
4942817 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.71 55.0 6.00e-01 84.5% 96.7%
2983287 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 60.0 6.17e-01 90.8% 99.2%
4077507 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.69 57.0 5.18e-01 86.6% 84.3%
4938264 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.69 51.0 5.46e-01 82.4% 87.2%
4930378 2008.1.1.152 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.68 58.0 5.83e-01 91.5% 97.9%
5000381 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.67 53.0 5.58e-01 82.4% 92.8%
5018208 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 49.0 5.59e-01 84.5% 100.0%
5032442 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.67 54.0 5.52e-01 83.8% 89.6%
4938798 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.67 52.0 5.22e-01 83.1% 80.0%
4940727 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 44.0 5.18e-01 85.9% 96.0%
5077023 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.67 54.0 5.15e-01 85.9% 90.3%
3944117 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 57.0 5.54e-01 91.5% 88.6%
5070502 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 53.0 5.32e-01 84.5% 99.3%
5053093 2008.1.1.236 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27126 0.66 55.0 5.17e-01 88.0% 98.2%
4956819 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 49.0 5.52e-01 79.6% 100.0%
5014475 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 55.0 5.50e-01 88.7% 91.0%
3956485 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.65 52.0 5.02e-01 83.1% 76.2%
5044478 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 42.0 4.99e-01 80.3% 100.0%
5004036 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.65 54.0 5.68e-01 90.8% 100.0%
5006562 2008.1.1.178 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NA-iREase1 0.65 52.0 5.10e-01 85.2% 89.0%
5013017 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 52.0 5.10e-01 85.2% 89.0%
5067190 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.64 51.0 5.00e-01 84.5% 88.4%
3929482 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.64 53.0 5.12e-01 88.7% 92.5%
4411383 2004.1.1.61 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FTHFS 0.62 56.0 3.70e-01 99.3% 75.9%
3500810 2008.1.1.68 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PND 0.62 44.0 4.74e-01 81.7% 86.7%
4965617 2008.1.1.219 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 0.62 51.0 5.28e-01 93.0% 96.9%
5057130 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.61 48.0 5.13e-01 83.1% 97.6%
4955102 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 46.0 4.79e-01 79.6% 87.4%
11007 2008.1.1.8 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BamHI 0.58 45.0 4.03e-01 82.4% 70.0%
4237788 2007.1.3.46 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PF29871 0.58 44.0 4.46e-01 90.1% 80.7%
5054865 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 47.0 3.91e-01 88.0% 92.4%
3177660 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 49.0 4.34e-01 95.8% 92.9%
3274249 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 49.0 4.27e-01 94.4% 83.7%
3173397 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 47.0 4.30e-01 91.5% 90.5%
3621210 247.1.1.42 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Lactamase_B_4 0.54 45.0 2.89e-01 90.1% 46.8%
3231992 247.1.1.29 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 0.54 44.0 2.83e-01 88.7% 40.6%
4988990 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.54 45.0 3.74e-01 90.1% 86.7%
3245213 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 38.0 4.32e-01 78.9% 98.1%
4134967 327.12.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › UbiD C-terminal domain-like › UbiD C-terminal domain-like › UbiD_C 0.54 40.0 3.28e-01 76.8% 87.5%
4584295 327.12.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › UbiD C-terminal domain-like › UbiD C-terminal domain-like › UbiD_C 0.53 37.0 3.50e-01 71.8% 98.3%
3255743 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.52 48.0 4.65e-01 100.0% 91.0%
4045953 2007.1.2.10 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 0.52 44.0 4.14e-01 96.5% 74.4%
3483498 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 46.0 4.33e-01 99.3% 94.9%
3677854 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 37.0 2.59e-01 78.9% 77.4%
D2 medium residues 149-212
PDB
Domain cluster: representative
D3 medium residues 224-279
PDB