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MK061416.1__AZF88212.1__SEA_SPARTOI_28__00028

Bact-Vir

MK061416.1__AZF88212.1__SEA_SPARTOI_28__00028

Identity

Accession:
MK061416 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spartoivirus› Rothia_phage_Spartoi

TaxID: 2483661

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-107_118-124
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.82 39.0 4.41e-01 81.4% 59.3%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.79 39.0 4.73e-01 85.3% 71.4%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.77 44.0 4.80e-01 85.3% 68.2%
4pioA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.76 38.0 3.08e-01 81.4% 27.1%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 40.0 4.42e-01 83.3% 68.3%
3dh0B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 41.0 3.29e-01 82.4% 31.6%
1vx4407 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 35.0 4.12e-01 81.4% 69.6%
1xrsB01 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.69 36.0 4.96e-01 80.4% 100.0%
2zfuA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 37.0 3.19e-01 84.3% 32.9%
3fzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 37.0 2.96e-01 82.4% 27.6%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 36.0 3.85e-01 86.3% 58.6%
2vz9A05 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 43.0 3.12e-01 82.4% 26.0%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.64 49.0 4.14e-01 80.4% 60.0%
3b82A06 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 3.47e-01 89.2% 46.3%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.64 48.0 4.11e-01 79.4% 62.0%
2lxrA00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.64 33.0 3.78e-01 82.4% 65.8%
2fyxA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.64 43.0 3.99e-01 93.1% 54.6%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 37.0 3.93e-01 83.3% 66.7%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 45.0 3.89e-01 79.4% 61.6%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.59 35.0 3.83e-01 86.3% 72.0%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 44.0 4.96e-01 87.3% 98.8%
2ip2A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 40.0 2.99e-01 82.4% 29.3%
8k5lA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 42.0 3.35e-01 80.4% 39.9%
3gwzA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 39.0 2.91e-01 82.4% 28.8%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.57 41.0 3.98e-01 76.5% 69.2%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 39.0 4.20e-01 72.5% 85.7%
3e3xA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 4.14e-01 92.2% 80.9%
3i9fB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 35.0 3.01e-01 85.3% 39.1%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.85e-01 92.2% 67.5%
1ve3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 3.18e-01 82.4% 38.2%
6hhnA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 32.0 3.41e-01 82.4% 66.3%
3n79A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.53 38.0 4.32e-01 88.2% 98.7%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 30.0 2.90e-01 76.5% 46.6%
2ijrA01 3.30.70.1270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains 0.52 38.0 3.96e-01 90.2% 80.4%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 38.0 4.20e-01 85.3% 96.4%
2f5gA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.50 46.0 4.22e-01 100.0% 86.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955075 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.82 40.0 4.73e-01 82.4% 67.1%
4033642 304.8.1.42 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3388 0.79 43.0 4.53e-01 84.3% 58.9%
5064952 328.5.1.0 ↗ a+b two layers › IF3-like › SirA-like › SirA-like 0.78 37.0 4.34e-01 81.4% 62.7%
3786894 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 41.0 4.67e-01 83.3% 67.5%
5023619 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.74 40.0 4.61e-01 82.4% 72.0%
5050933 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.72 40.0 4.51e-01 83.3% 70.0%
2410348 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.72 41.0 4.32e-01 84.3% 62.0%
5082825 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.72 40.0 3.91e-01 89.2% 50.0%
4935347 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 37.0 4.45e-01 80.4% 74.3%
5266 304.8.1.12 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.71 37.0 4.44e-01 80.4% 74.3%
4939665 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.71 41.0 4.75e-01 93.1% 78.7%
4669974 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.71 37.0 3.80e-01 85.3% 52.0%
4936721 304.24.1.37 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C 0.71 38.0 4.60e-01 86.3% 81.5%
5039114 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 36.0 4.70e-01 80.4% 86.7%
5068395 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.70 37.0 4.51e-01 80.4% 80.0%
3172782 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 41.0 4.44e-01 84.3% 69.4%
3398922 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.70 38.0 4.06e-01 87.3% 60.0%
3953640 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.69 39.0 4.04e-01 89.2% 58.5%
3958644 256.1.1.2 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF5703 0.69 36.0 4.46e-01 82.4% 80.0%
3164691 328.5.1.1 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.69 34.0 3.94e-01 81.4% 64.4%
3970832 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.68 39.0 4.16e-01 90.2% 63.3%
3704078 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.68 40.0 4.26e-01 92.2% 65.6%
3693414 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.66 43.0 3.13e-01 93.1% 25.2%
4027187 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.65 40.0 4.06e-01 93.1% 62.0%
3503148 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 43.0 2.97e-01 81.4% 24.1%
3318771 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 37.0 3.91e-01 90.2% 71.1%
5071707 304.19.1.4 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › DUF2110_N 0.58 35.0 3.97e-01 83.3% 80.0%
4932631 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.58 41.0 4.13e-01 91.2% 71.8%
4932025 304.24.1.37 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C 0.58 37.0 4.42e-01 87.3% 95.7%
3686581 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 34.0 3.87e-01 87.3% 80.0%
5049429 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.57 39.0 4.02e-01 87.3% 74.7%
3500435 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 38.0 4.06e-01 87.3% 78.9%
3885857 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 40.0 4.44e-01 75.5% 100.0%
3853135 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 41.0 3.86e-01 92.2% 64.2%
4651233 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 41.0 3.85e-01 92.2% 64.2%
3585079 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 40.0 3.19e-01 92.2% 37.6%
3616062 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 40.0 3.82e-01 92.2% 64.2%
3740868 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 33.0 3.71e-01 86.3% 76.2%
4974810 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.55 43.0 3.39e-01 82.4% 41.7%
3716385 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.51e-01 72.5% 92.9%
3695902 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.55 40.0 3.21e-01 92.2% 39.5%
4091315 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.55 39.0 3.88e-01 92.2% 70.0%
3604117 328.5.1.1 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.54 38.0 4.32e-01 79.4% 98.7%
3382212 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.54 39.0 3.71e-01 92.2% 64.2%
5061710 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.54 39.0 4.19e-01 91.2% 86.7%
4978505 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 3.10e-01 82.4% 37.3%
3239932 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.53 36.0 4.03e-01 86.3% 90.0%
5033793 328.5.1.1 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.52 37.0 4.18e-01 79.4% 100.0%
4539557 304.4.1.75 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD 0.52 44.0 4.58e-01 91.2% 100.0%
4945580 328.5.1.0 ↗ a+b two layers › IF3-like › SirA-like › SirA-like 0.52 37.0 4.10e-01 79.4% 96.2%
3254124 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 41.0 3.91e-01 88.2% 72.5%
4133554 304.24.1.21 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.51 38.0 3.08e-01 92.2% 41.6%
3821082 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 28.0 2.94e-01 78.4% 57.9%
5050481 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.89e-01 95.1% 80.6%
5017694 304.55.2.1 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp 0.50 46.0 4.04e-01 100.0% 81.3%
3267514 328.3.1.0 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.50 40.0 3.91e-01 84.3% 96.4%
3474250 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.50 36.0 3.04e-01 76.5% 75.3%