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MK061416.1__AZF88219.1__SEA_SPARTOI_35__00035
Bact-VirMK061416.1__AZF88219.1__SEA_SPARTOI_35__00035
Identity
- Accession:
- MK061416 ↗
- Kingdom:
- phage
Quality
79.4
mean pLDDT
Taxonomy
TaxID: 2483661
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-123
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ygyA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 29.0 | 3.54e-01 | 98.3% | 60.5% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.64 | 41.0 | 4.86e-01 | 95.9% | 100.0% |
| 3hj9B00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 51.0 | 4.24e-01 | 86.0% | 93.8% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.62 | 48.0 | 4.05e-01 | 81.0% | 84.2% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 28.0 | 3.22e-01 | 98.3% | 56.7% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 37.0 | 3.95e-01 | 98.3% | 68.2% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 36.0 | 3.83e-01 | 98.3% | 67.6% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.59 | 44.0 | 4.75e-01 | 77.7% | 100.0% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.59 | 42.0 | 4.71e-01 | 100.0% | 98.9% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 37.0 | 3.88e-01 | 99.2% | 69.4% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 35.0 | 4.21e-01 | 94.2% | 97.3% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.56 | 28.0 | 3.65e-01 | 99.2% | 87.5% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.56 | 42.0 | 4.06e-01 | 78.5% | 94.1% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 34.0 | 3.63e-01 | 90.9% | 70.0% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 33.0 | 3.37e-01 | 94.2% | 57.7% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 34.0 | 3.47e-01 | 95.9% | 62.9% |
| 1ocsA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 35.0 | 3.47e-01 | 93.4% | 59.1% |
| 1l3lA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.54 | 41.0 | 3.71e-01 | 100.0% | 57.6% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.53 | 28.0 | 3.53e-01 | 98.3% | 88.2% |
| 3va7A05 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 36.0 | 3.96e-01 | 71.1% | 84.0% |
| 1cwvA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.32e-01 | 91.7% | 66.7% |
| 4mhxA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 47.0 | 3.23e-01 | 100.0% | 60.3% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.53 | 28.0 | 3.48e-01 | 100.0% | 89.4% |
| 3bczA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.52 | 46.0 | 3.54e-01 | 99.2% | 86.0% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 35.0 | 4.03e-01 | 100.0% | 96.5% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.41e-01 | 91.7% | 70.2% |
| 2c7rA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 3.40e-01 | 86.0% | 81.0% |
| 2q78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 37.0 | 3.63e-01 | 78.5% | 89.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3840001 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.70 | 31.0 | 3.68e-01 | 98.3% | 58.8% |
| 4612662 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.68 | 31.0 | 3.48e-01 | 98.3% | 53.8% |
| 4596185 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.63 | 28.0 | 3.42e-01 | 100.0% | 62.8% |
| 3166475 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.63 | 46.0 | 5.16e-01 | 95.9% | 97.9% |
| 3787852 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.63 | 44.0 | 4.49e-01 | 93.4% | 73.3% |
| 134094 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.62 | 48.0 | 4.04e-01 | 81.0% | 83.8% |
| 4065918 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.62 | 28.0 | 3.20e-01 | 100.0% | 53.3% |
| 4975579 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.61 | 35.0 | 3.27e-01 | 88.4% | 43.9% |
| 5047813 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.61 | 37.0 | 3.35e-01 | 88.4% | 44.4% |
| 3990850 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.61 | 27.0 | 3.60e-01 | 100.0% | 76.9% |
| 5028178 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.60 | 45.0 | 3.76e-01 | 77.7% | 59.0% |
| 4957500 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.58 | 38.0 | 4.24e-01 | 81.0% | 85.3% |
| 4054495 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.58 | 35.0 | 3.87e-01 | 93.4% | 72.0% |
| 3991838 | 389.1.1.47 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › TIL_2 | 0.58 | 27.0 | 3.52e-01 | 100.0% | 81.0% |
| 4971398 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.57 | 33.0 | 3.52e-01 | 88.4% | 61.8% |
| 1919434 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.56 | 29.0 | 3.42e-01 | 79.3% | 70.9% |
| 3760913 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.55 | 40.0 | 4.02e-01 | 75.2% | 76.8% |
| 3537229 | 310.3.1.21 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HNOB | 0.55 | 40.0 | 4.32e-01 | 76.9% | 93.3% |
| 5062308 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.54 | 38.0 | 4.36e-01 | 97.5% | 97.8% |
| 3624277 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 44.0 | 3.25e-01 | 87.6% | 56.3% |
| 4012805 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.54 | 34.0 | 3.37e-01 | 93.4% | 58.5% |
| 5073773 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.53 | 39.0 | 3.95e-01 | 90.9% | 76.7% |
| 5030570 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 43.0 | 3.92e-01 | 88.4% | 93.3% |
| 3483462 | 2012.1.1.0 ↗ | a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like | 0.52 | 47.0 | 3.55e-01 | 99.2% | 87.0% |
| 3583029 | 2012.1.1.1 ↗ | a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › Memo | 0.51 | 44.0 | 3.39e-01 | 97.5% | 87.5% |
| 3932173 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.51 | 40.0 | 3.76e-01 | 84.3% | 96.7% |
| 3277023 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.53e-01 | 78.5% | 69.2% |