←Back to structures

MK061416.1__AZF88228.1__SEA_SPARTOI_45__00045

Bact-Vir

MK061416.1__AZF88228.1__SEA_SPARTOI_45__00045

Identity

Accession:
MK061416 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spartoivirus› Rothia_phage_Spartoi

TaxID: 2483661

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-100
PDB
Domain cluster: rep: MK882925.1__QDF14249.1__vBDshSR4C_001__00001__D13-92
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 6.22e-01 78.6% 100.0%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 49.0 4.96e-01 71.4% 64.6%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 52.0 4.70e-01 70.4% 78.6%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 37.0 3.57e-01 78.6% 43.1%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 48.0 5.56e-01 76.5% 98.5%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 52.0 4.86e-01 76.5% 81.0%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 50.0 4.50e-01 72.4% 76.2%
1nu7D01 1.20.120.750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 0.64 51.0 4.55e-01 84.7% 94.8%
5ch5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 42.0 2.61e-01 74.5% 14.0%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 4.20e-01 72.4% 79.6%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.55e-01 99.0% 50.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.49e-01 96.9% 47.3%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.68e-01 72.4% 60.6%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.63e-01 76.5% 69.4%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 30.0 3.66e-01 73.5% 86.4%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 3.50e-01 74.5% 76.2%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.24e-01 96.9% 52.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4101677 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 53.0 4.68e-01 72.4% 47.4%
4034325 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.79 59.0 5.42e-01 77.6% 76.0%
3976864 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 58.0 6.52e-01 78.6% 100.0%
3290900 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 58.0 5.25e-01 78.6% 71.5%
3637098 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.77 38.0 3.41e-01 78.6% 35.3%
3781291 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.76 38.0 3.82e-01 78.6% 47.0%
388408 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 58.0 5.37e-01 79.6% 83.3%
4051681 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 49.0 4.42e-01 73.5% 48.1%
4090636 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 49.0 5.64e-01 73.5% 92.9%
4536234 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 56.0 5.33e-01 78.6% 90.4%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 38.0 3.56e-01 77.6% 41.7%
3281073 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 54.0 5.33e-01 76.5% 92.4%
3958148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 55.0 4.85e-01 77.6% 95.6%
3587879 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.72 55.0 5.28e-01 79.6% 89.1%
3961155 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 49.0 4.41e-01 70.4% 71.9%
5075145 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 47.0 5.60e-01 70.4% 100.0%
3291218 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 52.0 4.74e-01 77.6% 100.0%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.70 52.0 3.90e-01 77.6% 81.7%
4094061 101.1.9.98 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.69 49.0 5.25e-01 78.6% 85.9%
4061721 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.69 49.0 4.41e-01 73.5% 76.2%
3966930 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.67 50.0 4.82e-01 78.6% 99.1%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.66 49.0 4.46e-01 78.6% 83.1%
4112182 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 38.0 3.57e-01 94.9% 50.0%
3989122 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.62 42.0 3.04e-01 94.9% 24.3%
3976170 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.62 42.0 4.76e-01 70.4% 97.1%
3948669 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.62 45.0 4.31e-01 76.5% 98.3%
3274594 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.58 42.0 3.30e-01 74.5% 45.5%
4383741 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 33.0 3.58e-01 87.8% 69.4%
5025927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.58e-01 70.4% 60.9%
3532258 327.11.2.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 0.54 45.0 4.63e-01 88.8% 100.0%
5013841 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 33.0 3.14e-01 70.4% 49.6%
4408011 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.51 33.0 3.87e-01 71.4% 100.0%
5034713 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 3.36e-01 70.4% 64.0%
3813055 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.51 37.0 2.51e-01 80.6% 18.5%
4243508 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 35.0 3.46e-01 71.4% 79.0%
3485296 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 35.0 3.42e-01 70.4% 74.3%
4064635 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.50 35.0 3.37e-01 80.6% 60.0%