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MK061416.1__AZF88233.1__SEA_SPARTOI_50__00050

Bact-Vir

MK061416.1__AZF88233.1__SEA_SPARTOI_50__00050

Identity

Accession:
MK061416 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spartoivirus› Rothia_phage_Spartoi

TaxID: 2483661

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-134
PDB
Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 31.0 4.50e-01 99.1% 82.5%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.66 50.0 5.31e-01 80.0% 95.0%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.64 49.0 5.11e-01 84.3% 88.7%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.58 35.0 4.35e-01 76.5% 100.0%
6iq1A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.57 30.0 2.84e-01 100.0% 39.9%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.54 32.0 3.40e-01 99.1% 65.0%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 34.0 4.04e-01 82.6% 92.5%
8gf5C01 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.88e-01 81.7% 100.0%
7lldA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 38.0 2.98e-01 74.8% 77.7%
4j7hA02 3.90.79.40 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit 0.52 40.0 3.61e-01 94.8% 58.8%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 31.0 3.58e-01 80.0% 87.5%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.50 38.0 2.94e-01 80.0% 70.3%
2mhfA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 3.40e-01 73.9% 97.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.84 71.0 7.47e-01 100.0% 97.1%
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.73 55.0 5.89e-01 84.3% 90.0%
3944712 101.1.9.40 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N 0.71 56.0 5.89e-01 86.1% 91.4%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 50.0 5.02e-01 80.0% 77.4%
3782429 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 54.0 5.75e-01 89.6% 98.0%
3203041 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 54.0 5.74e-01 91.3% 100.0%
3232782 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 39.0 4.84e-01 70.4% 100.0%
3400699 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 46.0 4.86e-01 79.1% 100.0%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.61 55.0 5.02e-01 99.1% 93.3%
3947416 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.61 54.0 5.54e-01 95.7% 100.0%
5001312 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.60 40.0 4.73e-01 94.8% 97.5%
3718248 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.57 36.0 3.96e-01 79.1% 80.0%
3813426 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 32.0 3.52e-01 79.1% 77.8%
3536870 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 43.0 3.14e-01 92.2% 42.4%
3667682 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 31.0 3.39e-01 79.1% 72.6%
5053351 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.80e-01 89.6% 87.4%
5054820 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.50 40.0 2.67e-01 82.6% 27.5%
4972477 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 38.0 3.94e-01 87.8% 89.5%
D2 high residues 147-209
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.71 39.0 3.73e-01 74.6% 45.3%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 39.0 4.25e-01 74.6% 68.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 50.0 4.93e-01 81.0% 72.7%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 37.0 4.51e-01 76.2% 93.9%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 37.0 3.94e-01 76.2% 60.0%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 51.0 4.24e-01 84.1% 49.6%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 51.0 4.95e-01 82.5% 87.1%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 50.0 4.02e-01 84.1% 42.4%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 49.0 4.28e-01 82.5% 55.4%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 50.0 4.81e-01 84.1% 90.1%
3razA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 45.0 3.60e-01 74.6% 87.4%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 47.0 3.91e-01 82.5% 63.2%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 4.18e-01 85.7% 51.4%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 4.06e-01 84.1% 54.6%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.62 47.0 3.64e-01 85.7% 66.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 46.0 4.50e-01 84.1% 90.1%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 45.0 3.92e-01 82.5% 53.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 3.86e-01 84.1% 61.9%
3thxB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.58 40.0 3.17e-01 76.2% 32.9%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.79e-01 90.5% 85.1%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 36.0 3.78e-01 74.6% 71.4%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.55 39.0 3.28e-01 76.2% 45.3%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.71e-01 74.6% 95.9%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 40.0 2.95e-01 77.8% 86.7%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 43.0 3.71e-01 90.5% 76.9%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.54 43.0 3.10e-01 87.3% 53.0%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 39.0 2.53e-01 79.4% 23.3%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.53 37.0 3.11e-01 73.0% 65.4%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 37.0 2.98e-01 77.8% 97.1%
4kzsA03 3.30.160.710 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.41e-01 82.5% 94.8%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.18e-01 96.8% 41.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4341865 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.73 53.0 5.67e-01 77.8% 89.1%
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.72 55.0 5.68e-01 82.5% 88.3%
3885750 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.71 40.0 4.43e-01 71.4% 70.0%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 38.0 4.04e-01 73.0% 60.0%
1396826 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.69 50.0 4.93e-01 82.5% 73.1%
2352 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 34.0 4.44e-01 73.0% 87.9%
4012540 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 55.0 5.22e-01 90.5% 88.0%
4959887 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.66 54.0 5.22e-01 90.5% 91.4%
4965851 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.66 45.0 4.81e-01 76.2% 81.8%
5032509 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.66 52.0 5.16e-01 85.7% 84.6%
3728854 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 48.0 4.82e-01 81.0% 86.2%
4889754 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.66 44.0 4.56e-01 85.7% 75.0%
3209694 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 50.0 4.36e-01 84.1% 60.0%
4959885 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.65 52.0 4.80e-01 92.1% 78.8%
3934739 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 50.0 4.39e-01 87.3% 63.0%
5072644 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.64 49.0 3.93e-01 84.1% 53.1%
3708854 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.64 37.0 4.09e-01 76.2% 72.0%
3642022 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.64 47.0 4.18e-01 82.5% 78.0%
3482775 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.64 42.0 4.85e-01 87.3% 95.6%
3290045 300.1.1.12 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.64 39.0 2.75e-01 82.5% 20.0%
3740383 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.63 48.0 3.04e-01 84.1% 17.0%
3494145 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 48.0 4.03e-01 85.7% 50.4%
5019748 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 51.0 4.20e-01 92.1% 56.7%
3959341 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.63 48.0 3.76e-01 84.1% 67.9%
3514660 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 46.0 4.22e-01 82.5% 60.0%
3246050 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 45.0 4.11e-01 82.5% 64.4%
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 49.0 4.32e-01 87.3% 72.2%
3403381 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 45.0 3.95e-01 82.5% 72.0%
3828070 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.60 42.0 4.45e-01 73.0% 87.3%
3991383 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 45.0 4.08e-01 82.5% 61.1%
3846927 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 47.0 4.12e-01 85.7% 77.9%
3402001 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 44.0 3.98e-01 81.0% 58.9%
3216768 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 46.0 3.92e-01 84.1% 53.3%
3436776 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 47.0 4.05e-01 85.7% 59.0%
3408937 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 46.0 4.28e-01 85.7% 71.2%
4961065 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 44.0 4.54e-01 84.1% 93.3%
3426675 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.58 41.0 4.19e-01 79.4% 78.0%
3907024 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.58 43.0 2.73e-01 79.4% 24.1%
3286982 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.58 44.0 3.80e-01 84.1% 53.8%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.56 40.0 2.86e-01 76.2% 46.2%
3656728 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.55 37.0 3.85e-01 77.8% 76.3%
3658860 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 2.78e-01 84.1% 44.1%
3262316 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.52 37.0 2.89e-01 77.8% 45.8%
4070998 601.18.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.52 41.0 2.97e-01 87.3% 96.3%
3990109 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.51 38.0 3.10e-01 84.1% 41.5%
3220940 2.1.1.28 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.50 36.0 2.97e-01 77.8% 69.6%