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MK061416.1__AZF88236.1__SEA_SPARTOI_53__00053

Bact-Vir

MK061416.1__AZF88236.1__SEA_SPARTOI_53__00053

Identity

Accession:
MK061416 ↗
Kingdom:
phage

Quality

69.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spartoivirus› Rothia_phage_Spartoi

TaxID: 2483661

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-41_59-123
PDB
D2 high residues 128-192
PDB
Domain cluster: rep: MZ028627.1__QWS68241.1__SEA_VANLEE_124__00124__D150-208
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.68 28.0 3.59e-01 70.8% 62.2%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.61 47.0 4.98e-01 100.0% 98.2%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.57 40.0 3.90e-01 100.0% 69.0%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 48.0 3.86e-01 100.0% 95.7%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.55 33.0 3.74e-01 87.7% 84.8%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.55 29.0 2.91e-01 84.6% 47.7%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.54 30.0 3.54e-01 84.6% 82.5%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 3.56e-01 89.2% 70.1%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.51 39.0 2.86e-01 100.0% 28.6%
4qn0B00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.50 41.0 2.89e-01 95.4% 32.2%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.50 41.0 4.02e-01 92.3% 83.8%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 27.0 2.92e-01 78.5% 59.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4953037 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.73 36.0 3.40e-01 84.6% 40.0%
3253686 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.61 47.0 3.90e-01 86.2% 92.5%
3436497 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 39.0 4.09e-01 92.3% 76.7%
4279904 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.57 47.0 3.08e-01 89.2% 32.0%
3788010 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.56 43.0 3.93e-01 87.7% 93.7%
3224013 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.56 33.0 3.73e-01 90.8% 90.0%
5035835 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 44.0 4.56e-01 98.5% 95.0%
3621100 59.1.2.4 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Leo1 0.55 42.0 3.70e-01 86.2% 69.5%
3172837 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.55 42.0 3.50e-01 87.7% 95.4%
4057793 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.54 36.0 2.81e-01 100.0% 28.5%
5037939 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 41.0 3.19e-01 98.5% 36.1%
3377603 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.53 41.0 3.51e-01 90.8% 79.2%
3585710 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.52 31.0 2.43e-01 83.1% 24.8%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 40.0 3.65e-01 98.5% 61.1%
3668417 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 36.0 2.89e-01 72.3% 60.8%
3392130 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.51 41.0 4.12e-01 100.0% 92.3%
3783594 12.3.1.26 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_63N 0.51 37.0 2.50e-01 80.0% 87.7%
4327598 59.1.1.10 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.51 39.0 3.35e-01 87.7% 74.2%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.51 37.0 3.74e-01 100.0% 80.0%
3941093 3792.1.1.0 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.51 43.0 3.85e-01 96.9% 80.0%
3457984 59.1.2.4 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Leo1 0.51 39.0 3.35e-01 87.7% 76.3%
4019353 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.50 40.0 3.63e-01 87.7% 74.4%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.50 36.0 3.61e-01 98.5% 75.7%