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AZI75842.1

Arc-Vir

MK064564__AZI75842.1__SBFV3-gp07__00007

Identity

Accession:
MK064564 ↗
Protein ID:
AZI75842.1 ↗
Kingdom:
archaea

Quality

88.3 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Deltalipothrixvirus› Sulfolobales_Beppu_filamentous_virus_3

TaxID: 2493124

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-117
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 34.0 4.52e-01 81.0% 91.9%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.61 46.0 3.99e-01 79.3% 84.6%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 51.0 3.58e-01 91.4% 37.7%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 39.0 3.48e-01 70.7% 71.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 43.0 4.00e-01 84.5% 72.7%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.56 37.0 3.10e-01 87.9% 40.7%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 34.0 3.29e-01 85.3% 51.1%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.73e-01 78.4% 63.1%
1lhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 46.0 3.39e-01 91.4% 73.5%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 4.14e-01 100.0% 77.7%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.54 36.0 4.05e-01 86.2% 87.8%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.96e-01 85.3% 95.3%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.79e-01 99.1% 66.9%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.76e-01 87.1% 82.3%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.53 47.0 3.47e-01 96.6% 64.3%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.53 45.0 4.21e-01 95.7% 86.0%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.75e-01 87.1% 82.7%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 38.0 3.52e-01 75.9% 75.0%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 49.0 3.79e-01 100.0% 93.3%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.52 35.0 3.91e-01 87.1% 89.8%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 45.0 4.23e-01 100.0% 91.2%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 4.12e-01 100.0% 88.3%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 48.0 3.96e-01 100.0% 92.3%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 3.29e-01 99.1% 42.0%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 36.0 3.38e-01 87.9% 57.6%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 37.0 3.86e-01 91.4% 82.7%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 45.0 3.43e-01 99.1% 88.9%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.68e-01 87.1% 85.6%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 44.0 3.36e-01 95.7% 56.8%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.76e-01 87.1% 91.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.75 56.0 5.03e-01 77.6% 61.3%
3610630 71.1.1.19 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.69 63.0 4.98e-01 100.0% 80.4%
3402087 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.69 38.0 3.32e-01 86.2% 37.1%
3258590 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.66 48.0 5.27e-01 86.2% 90.5%
3215691 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 46.0 3.35e-01 71.6% 35.3%
3959061 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.64 52.0 4.56e-01 86.2% 80.5%
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.63 59.0 4.56e-01 100.0% 73.3%
1710650 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.63 40.0 4.22e-01 92.2% 71.6%
3892200 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.63 58.0 4.57e-01 100.0% 74.9%
3603056 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 39.0 4.80e-01 82.8% 97.3%
3802536 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.60 46.0 4.09e-01 80.2% 91.5%
334108 71.1.1.9 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › VioE 0.60 45.0 3.88e-01 79.3% 84.4%
2485676 292.3.1.1 ↗ a+b two layers › RIP/Polo-box domain › TipC soluble domain › TipC soluble domain › TipC 0.59 46.0 3.95e-01 91.4% 52.2%
3272884 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.59 44.0 3.77e-01 78.4% 63.2%
3576881 3347.1.1.0 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 0.59 43.0 4.65e-01 90.5% 89.0%
3594404 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.58 49.0 3.68e-01 90.5% 44.0%
4010689 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 38.0 4.08e-01 80.2% 77.0%
3708068 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 3.52e-01 84.5% 52.5%
3338842 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.57 52.0 3.60e-01 99.1% 62.9%
4981911 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 41.0 3.21e-01 75.9% 92.1%
3513352 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.56 45.0 4.53e-01 96.6% 85.2%
5009919 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 51.0 4.17e-01 100.0% 76.6%
5028155 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 40.0 3.63e-01 87.9% 56.1%
3718216 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.55 42.0 4.10e-01 80.2% 93.6%
5051273 12.3.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.54 46.0 3.63e-01 94.0% 97.6%
5065385 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.54 49.0 4.37e-01 99.1% 84.2%
3258675 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.54 42.0 3.93e-01 81.9% 67.9%
3608121 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.54 49.0 3.72e-01 99.1% 79.2%
5045702 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 39.0 3.01e-01 75.0% 94.0%
1115776 295.1.1.5 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly 0.53 42.0 3.63e-01 84.5% 69.8%
3378528 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 49.0 3.92e-01 100.0% 93.6%
5000263 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 48.0 4.03e-01 100.0% 76.9%
4160858 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.53 44.0 4.10e-01 92.2% 98.7%
154696 9.1.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Nitrophorin 0.53 47.0 4.00e-01 100.0% 76.9%
4937307 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 48.0 4.05e-01 99.1% 96.3%
3421782 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.52 49.0 3.74e-01 100.0% 94.8%
1140350 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.52 45.0 4.14e-01 95.7% 83.2%
4979775 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 47.0 3.61e-01 99.1% 83.5%
4977909 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 34.0 3.47e-01 80.2% 68.2%
3432014 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.52 46.0 4.13e-01 97.4% 92.1%
3361739 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.52 48.0 3.68e-01 100.0% 89.6%
5035188 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.51 43.0 4.30e-01 99.1% 89.8%
4944259 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 47.0 3.70e-01 100.0% 92.8%
3249471 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.51 45.0 3.71e-01 94.0% 92.0%
3800450 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.51 45.0 3.20e-01 99.1% 43.5%
3868838 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 41.0 3.70e-01 87.1% 83.1%
3618632 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.50 44.0 3.22e-01 98.3% 46.6%