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AZI75844.1

Arc-Vir

MK064564__AZI75844.1__SBFV3-gp09__00009

Identity

Accession:
MK064564 ↗
Protein ID:
AZI75844.1 ↗
Kingdom:
archaea

Quality

65.0 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Deltalipothrixvirus› Sulfolobales_Beppu_filamentous_virus_3

TaxID: 2493124

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-55
PDB
Domain cluster: rep: MZ648033.1__QYW07338.1__SEA_ROONEY_81__00081__D68-134
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fphX01 3.30.1370.160 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.77 65.0 5.92e-01 100.0% 81.8%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.76 50.0 4.66e-01 70.4% 55.2%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.75 64.0 5.44e-01 100.0% 66.0%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.73 61.0 5.68e-01 100.0% 87.3%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.73 60.0 4.76e-01 100.0% 49.2%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.72 61.0 5.81e-01 100.0% 92.5%
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.69 58.0 5.48e-01 98.1% 89.7%
7m0oA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.69 59.0 4.11e-01 98.1% 67.4%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 55.0 3.70e-01 92.6% 43.1%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 5.11e-01 100.0% 81.9%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.41e-01 98.1% 96.7%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 5.04e-01 100.0% 82.2%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.67e-01 98.1% 79.8%
1fokA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.61e-01 100.0% 75.9%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.97e-01 100.0% 95.8%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 53.0 3.86e-01 100.0% 41.1%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.45e-01 100.0% 66.3%
4cgxA00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.62 46.0 3.26e-01 79.6% 66.5%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 39.0 4.03e-01 81.5% 67.3%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 50.0 4.49e-01 100.0% 76.5%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 4.03e-01 83.3% 73.0%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.68e-01 100.0% 95.1%
1vx7600 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.58 47.0 4.01e-01 96.3% 89.8%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.58 46.0 3.86e-01 100.0% 95.6%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.16e-01 98.1% 80.2%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.00e-01 100.0% 61.4%
2qm3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.07e-01 100.0% 63.9%
2ctdA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 32.0 2.71e-01 92.6% 30.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.33e-01 100.0% 95.3%
1kytA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.55 44.0 4.21e-01 98.1% 78.1%
1jznA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 46.0 3.56e-01 100.0% 89.6%
4am6A03 3.30.420.580 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 40.0 2.67e-01 81.5% 21.7%
4uwwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 46.0 3.59e-01 100.0% 87.7%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.54 47.0 3.87e-01 96.3% 57.3%
2gqcA01 3.30.70.2080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.70e-01 72.2% 71.4%
1gz2A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 44.0 3.46e-01 100.0% 89.9%
1litA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 45.0 3.52e-01 100.0% 89.3%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 45.0 3.58e-01 100.0% 85.5%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.53 44.0 3.52e-01 100.0% 82.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3966114 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.86 71.0 6.13e-01 92.6% 64.7%
3236950 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.80 70.0 6.45e-01 100.0% 90.0%
3216952 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 70.0 6.05e-01 100.0% 85.9%
3891429 2003.1.5.134 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF4470+DUF4471 0.78 56.0 3.37e-01 75.9% 27.6%
3855906 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.77 67.0 6.06e-01 100.0% 90.7%
3581967 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.77 66.0 6.25e-01 100.0% 93.8%
3595128 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.76 66.0 6.30e-01 100.0% 92.3%
3357930 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.76 66.0 5.98e-01 100.0% 86.7%
4228350 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.75 65.0 6.14e-01 100.0% 93.8%
3403645 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.75 64.0 6.23e-01 100.0% 96.7%
4014318 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 62.0 5.51e-01 100.0% 70.6%
3595328 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 63.0 5.16e-01 100.0% 58.1%
4930904 328.5.1.7 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › PF30415 0.74 63.0 6.09e-01 96.3% 90.0%
3637371 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 65.0 5.22e-01 100.0% 58.1%
4011288 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 65.0 6.28e-01 100.0% 100.0%
3950059 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 61.0 5.79e-01 100.0% 91.2%
3260870 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 63.0 5.35e-01 100.0% 66.7%
4088260 2005.1.1.5 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c 0.72 61.0 3.70e-01 94.4% 16.5%
4199049 101.8.1.5 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c 0.71 60.0 3.54e-01 94.4% 13.3%
3555783 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.70 62.0 5.19e-01 100.0% 74.2%
3710687 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.70 58.0 5.37e-01 100.0% 78.7%
3495994 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.70 59.0 5.80e-01 100.0% 100.0%
4993381 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.68 58.0 4.88e-01 94.4% 62.2%
3544301 2004.1.1.635 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12, AAA_33 0.68 57.0 3.67e-01 100.0% 27.9%
3939046 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.67 56.0 5.26e-01 100.0% 98.6%
5071964 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.26e-01 98.1% 94.3%
4049326 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.66 57.0 3.77e-01 100.0% 91.3%
3266992 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.66 55.0 5.28e-01 98.1% 98.5%
4304156 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.66 56.0 3.79e-01 100.0% 89.5%
3405387 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.80e-01 77.8% 90.9%
4973677 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.65 57.0 3.68e-01 98.1% 46.3%
3905735 101.1.2.94 ↗ alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.64 53.0 4.72e-01 100.0% 82.4%
5055703 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.15e-01 96.3% 98.3%
5046905 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 4.59e-01 100.0% 83.3%
3706548 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 53.0 4.69e-01 100.0% 77.6%
4127496 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.63 41.0 3.79e-01 70.4% 49.3%
3275926 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.62 49.0 5.07e-01 98.1% 100.0%
3830975 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.86e-01 98.1% 77.1%
3512723 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 43.0 2.89e-01 74.1% 82.7%
3495995 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.62 52.0 5.21e-01 100.0% 98.2%
3329724 101.1.2.60 ↗ alpha arrays › HTH › HTH › winged helix domain › HA2_N 0.61 52.0 4.85e-01 98.1% 77.1%
3358560 101.1.2.509 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25879 0.61 49.0 4.52e-01 92.6% 89.3%
5055732 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 49.0 4.20e-01 100.0% 75.0%
3498206 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.76e-01 98.1% 83.1%
3602284 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.33e-01 98.1% 67.1%
5011851 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.26e-01 100.0% 68.0%
3033172 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.20e-01 92.6% 84.8%
3596774 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.57 47.0 3.73e-01 96.3% 51.7%
3532207 7558.1.1.10 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.57 46.0 3.89e-01 100.0% 69.5%
4942703 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 3.66e-01 100.0% 44.3%
3785450 304.9.1.103 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26763 0.56 45.0 3.85e-01 88.9% 57.8%
3961123 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.56 47.0 3.75e-01 98.1% 90.0%
3831923 101.1.2.35 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_beta 0.56 46.0 4.47e-01 100.0% 87.7%
3338320 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.56 46.0 4.59e-01 98.1% 94.5%
3332625 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.56 46.0 3.91e-01 98.1% 54.7%
3289632 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.52e-01 100.0% 83.1%
3625572 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 42.0 3.24e-01 87.0% 85.2%
4554419 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.55 45.0 3.70e-01 98.1% 92.7%
3373462 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 42.0 3.18e-01 92.6% 46.3%
3486417 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.51e-01 100.0% 90.0%
3991850 101.1.2.509 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25879 0.54 45.0 4.18e-01 100.0% 90.5%
3741359 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.16e-01 100.0% 53.3%
3622271 6103.1.1.0 ↗ alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain 0.53 41.0 2.78e-01 83.3% 37.9%
4979145 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.58e-01 100.0% 63.7%
D2 medium residues 112-170
PDB