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AZI75881.1

Arc-Vir

MK064564__AZI75881.1__SBFV3-gp46__00046

Identity

Accession:
MK064564 ↗
Protein ID:
AZI75881.1 ↗
Kingdom:
archaea

Quality

76.7 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Deltalipothrixvirus› Sulfolobales_Beppu_filamentous_virus_3

TaxID: 2493124

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-102
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.68 41.0 3.58e-01 86.8% 39.4%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.63e-01 100.0% 62.1%
2iaiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 40.0 4.08e-01 100.0% 63.1%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 47.0 4.71e-01 100.0% 84.5%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.61 45.0 3.48e-01 80.9% 70.6%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 44.0 3.37e-01 80.9% 70.2%
1qrjA02 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.58 49.0 4.56e-01 94.1% 80.0%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.02e-01 100.0% 59.8%
3v9pB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.32e-01 91.2% 69.3%
5jxxA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.56 37.0 3.81e-01 91.2% 71.2%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.55 43.0 3.69e-01 100.0% 51.7%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.54 40.0 3.76e-01 80.9% 73.9%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 3.66e-01 100.0% 83.9%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 44.0 2.84e-01 92.6% 44.2%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 38.0 4.14e-01 91.2% 91.2%
1fpzC00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 45.0 3.41e-01 98.5% 87.1%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.53 39.0 3.26e-01 82.4% 77.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3792105 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.70 42.0 4.50e-01 100.0% 68.3%
3391260 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 43.0 4.91e-01 100.0% 88.0%
3217750 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.68 44.0 4.45e-01 82.4% 65.7%
None — 0.67 46.0 4.93e-01 72.1% 85.0%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.65 47.0 4.64e-01 100.0% 72.0%
3238440 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.64 47.0 4.77e-01 100.0% 83.1%
4995687 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.63 42.0 4.43e-01 82.4% 80.0%
3646698 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.62 45.0 4.27e-01 100.0% 62.4%
3395479 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 46.0 4.94e-01 100.0% 91.4%
3677427 101.1.1.66 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.61 44.0 3.68e-01 100.0% 43.3%
3535212 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.60 42.0 3.85e-01 100.0% 54.4%
3218544 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 43.0 4.07e-01 100.0% 65.0%
3609170 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 48.0 3.95e-01 100.0% 84.3%
3936658 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.57 42.0 3.71e-01 100.0% 54.0%
3929660 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.54 42.0 3.65e-01 88.2% 84.5%
1680487 4967.1.1.3 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Mononeg_RNA_pol 0.53 43.0 3.62e-01 94.1% 72.0%
3250878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 4.09e-01 100.0% 81.3%
3282927 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 34.0 3.13e-01 77.9% 47.4%